Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HGK51_RS06790 Genome accession   NZ_CP051511
Coordinates   1405554..1405814 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-006     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1400554..1410814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK51_RS08075 - 1400988..1401116 (-) 129 WP_000243255.1 hypothetical protein -
  HGK51_RS06780 (HGK51_06765) - 1401116..1403050 (-) 1935 WP_000277569.1 type IA DNA topoisomerase -
  HGK51_RS06785 (HGK51_06770) - 1403043..1405541 (-) 2499 WP_000478385.1 VirB4 family type IV secretion system protein -
  HGK51_RS06790 (HGK51_06775) comB3 1405554..1405814 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  HGK51_RS06795 (HGK51_06780) - 1405815..1406117 (-) 303 WP_000649843.1 TrbC/VirB2 family protein -
  HGK51_RS06800 (HGK51_06785) - 1406107..1408023 (-) 1917 WP_000332150.1 toprim domain-containing protein -
  HGK51_RS06805 (HGK51_06790) - 1408034..1408798 (-) 765 WP_202170700.1 hypothetical protein -
  HGK51_RS08000 - 1408858..1408991 (+) 134 Protein_1336 IS1595 family transposase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=385158 HGK51_RS06790 WP_000602756.1 1405554..1405814(-) (comB3) [Helicobacter pylori strain ASHA-006]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=385158 HGK51_RS06790 WP_000602756.1 1405554..1405814(-) (comB3) [Helicobacter pylori strain ASHA-006]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453