Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HG564_RS05710 Genome accession   NZ_CP051503
Coordinates   1217541..1218590 (+) Length   349 a.a.
NCBI ID   WP_202171751.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-014     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1212541..1223590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG564_RS05695 (HG564_05690) - 1213228..1214945 (+) 1718 Protein_1115 hypothetical protein -
  HG564_RS05700 (HG564_05695) asd 1215124..1216164 (-) 1041 WP_000860919.1 aspartate-semialdehyde dehydrogenase -
  HG564_RS05705 (HG564_05700) hisS 1216151..1217479 (-) 1329 WP_000632530.1 histidine--tRNA ligase -
  HG564_RS05710 (HG564_05705) waaF 1217541..1218590 (+) 1050 WP_202171751.1 lipopolysaccharide heptosyltransferase II Regulator
  HG564_RS05715 (HG564_05710) - 1218783..1219163 (-) 381 WP_000744161.1 hypothetical protein -
  HG564_RS05720 (HG564_05715) fusA 1219707..1221785 (-) 2079 WP_000101894.1 elongation factor G -
  HG564_RS05725 (HG564_05720) rpsG 1221797..1222264 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HG564_RS05730 (HG564_05725) rpsL 1222280..1222687 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39519.37 Da        Isoelectric Point: 9.8130

>NTDB_id=384833 HG564_RS05710 WP_202171751.1 1217541..1218590(+) (waaF) [Helicobacter pylori strain SHIM-014]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIISAPKDYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLSTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=384833 HG564_RS05710 WP_202171751.1 1217541..1218590(+) (waaF) [Helicobacter pylori strain SHIM-014]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGTCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATTTCTGCCCCTAAAGACT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCTCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTGTTGAACCACCATTTAAGTTGTTCGCCCTGCAAGAAACGAGTCTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361

Multiple sequence alignment