Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   HC659_RS08025 Genome accession   NZ_CP051465
Coordinates   1544610..1545059 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539610..1550059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS07985 (HC659_15780) ctaE 1539629..1540252 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  HC659_RS07990 (HC659_15790) ctaF 1540255..1540587 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  HC659_RS07995 (HC659_15800) ctaG 1540614..1541507 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  HC659_RS08000 (HC659_15810) ylbA 1541539..1541901 (-) 363 WP_003232238.1 YugN family protein -
  HC659_RS08005 (HC659_15820) ylbB 1542041..1542487 (+) 447 WP_003221362.1 CBS domain-containing protein -
  HC659_RS08010 (HC659_15830) ylbC 1542571..1543611 (+) 1041 WP_032721504.1 CAP domain-containing protein -
  HC659_RS08015 (HC659_15840) ylbD 1543841..1544239 (+) 399 WP_003232233.1 YlbD family protein -
  HC659_RS08020 (HC659_15850) ylbE 1544255..1544494 (+) 240 WP_003232231.1 YlbE-like family protein -
  HC659_RS08025 (HC659_15860) ylbF 1544610..1545059 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  HC659_RS08030 (HC659_15870) ylbG 1545114..1545386 (+) 273 WP_009967171.1 YlbG family protein -
  HC659_RS08035 (HC659_15890) rsmD 1545709..1546263 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HC659_RS08040 (HC659_15900) coaD 1546268..1546753 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  HC659_RS08045 (HC659_15910) spoVV 1546764..1547990 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  HC659_RS08050 (HC659_15920) ylbK 1548171..1548953 (+) 783 WP_003232221.1 patatin family protein -
  HC659_RS08055 (HC659_15930) sepM 1548955..1549980 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=383715 HC659_RS08025 WP_003221370.1 1544610..1545059(+) (ylbF) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=383715 HC659_RS08025 WP_003221370.1 1544610..1545059(+) (ylbF) [Bacillus subtilis subsp. subtilis strain UCMB5121]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1