Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HGK50_RS08025 | Genome accession | NZ_CP051435 |
| Coordinates | 1002589..1002849 (+) | Length | 86 a.a. |
| NCBI ID | WP_338325771.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ASHA-005 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 997589..1007849
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGK50_RS04740 (HGK50_04735) | - | 997673..999534 (-) | 1862 | Protein_936 | dynamin family protein | - |
| HGK50_RS04745 (HGK50_04740) | - | 999605..1000369 (+) | 765 | WP_202135306.1 | hypothetical protein | - |
| HGK50_RS04750 (HGK50_04745) | - | 1000380..1002296 (+) | 1917 | WP_202135307.1 | hypothetical protein | - |
| HGK50_RS04755 (HGK50_04750) | - | 1002286..1002588 (+) | 303 | WP_000649845.1 | TrbC/VirB2 family protein | - |
| HGK50_RS08025 (HGK50_04755) | comB3 | 1002589..1002849 (+) | 261 | WP_338325771.1 | virB3 type IV secretion protein | Machinery gene |
| HGK50_RS04760 (HGK50_04760) | - | 1002862..1003647 (+) | 786 | Protein_941 | DNA transfer protein | - |
| HGK50_RS04765 (HGK50_04765) | tnpA | 1003773..1004189 (-) | 417 | WP_202135308.1 | IS200/IS605 family transposase | - |
| HGK50_RS04770 (HGK50_04770) | - | 1004226..1005572 (+) | 1347 | WP_202136114.1 | RNA-guided endonuclease TnpB family protein | - |
| HGK50_RS04780 (HGK50_04775) | - | 1005611..1007324 (+) | 1714 | Protein_944 | type IV secretion system DNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 10212.12 Da Isoelectric Point: 4.6082
>NTDB_id=383650 HGK50_RS08025 WP_338325771.1 1002589..1002849(+) (comB3) [Helicobacter pylori strain ASHA-005]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSTSFLFVWSLLYGVVLLVVLITMFYILEFFDEDITNIILANLTLKND
TKEYYA
MILNYVETINVREISKKEKFLKLNMNSWIISFLSTSFLFVWSLLYGVVLLVVLITMFYILEFFDEDITNIILANLTLKND
TKEYYA
Nucleotide
Download Length: 261 bp
>NTDB_id=383650 HGK50_RS08025 WP_338325771.1 1002589..1002849(+) (comB3) [Helicobacter pylori strain ASHA-005]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCACTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGTATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCACTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGTATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
44.828 |
100 |
0.453 |