Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BSUW23_RS17680 Genome accession   NC_014479
Coordinates   3425965..3426687 (-) Length   240 a.a.
NCBI ID   WP_013308058.1    Uniprot ID   E0U4A6
Organism   Bacillus spizizenii str. W23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3420965..3431687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSUW23_RS17645 (BSUW23_17345) fliW 3421106..3421537 (-) 432 WP_003219723.1 flagellar assembly protein FliW -
  BSUW23_RS17650 (BSUW23_17350) - 3421558..3422133 (-) 576 WP_003219720.1 DUF6470 family protein -
  BSUW23_RS17655 (BSUW23_17355) flgL 3422180..3423076 (-) 897 WP_003219718.1 flagellar hook-associated protein FlgL -
  BSUW23_RS17660 (BSUW23_17360) flgK 3423086..3424609 (-) 1524 WP_003219716.1 flagellar hook-associated protein FlgK -
  BSUW23_RS17665 (BSUW23_17365) flgN 3424628..3425110 (-) 483 WP_003219714.1 flagellar protein FlgN -
  BSUW23_RS17670 (BSUW23_17370) flgM 3425126..3425392 (-) 267 WP_003219712.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSUW23_RS17675 (BSUW23_17375) - 3425473..3425892 (-) 420 WP_003219710.1 TIGR03826 family flagellar region protein -
  BSUW23_RS17680 (BSUW23_17380) comFC 3425965..3426687 (-) 723 WP_013308058.1 ComF family protein Machinery gene
  BSUW23_RS17685 (BSUW23_17385) comFB 3426651..3426947 (-) 297 WP_003219707.1 late competence protein ComFB -
  BSUW23_RS17690 (BSUW23_17390) comFA 3427016..3428398 (-) 1383 WP_079996654.1 ATP-dependent helicase ComFA Machinery gene
  BSUW23_RS17695 (BSUW23_17395) - 3428506..3429351 (-) 846 WP_003219702.1 DegV family protein -
  BSUW23_RS17700 (BSUW23_17400) degU 3429449..3430138 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BSUW23_RS17705 (BSUW23_17405) degS 3430221..3431378 (-) 1158 WP_003219693.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27297.64 Da        Isoelectric Point: 9.4915

>NTDB_id=38220 BSUW23_RS17680 WP_013308058.1 3425965..3426687(-) (comFC) [Bacillus spizizenii str. W23]
MPNEAGGGIYKLICLLCDSPFSQAITWRALFLLKPEEKVCHTCRSKLKKITGHICTLCGRPQSVHAVCKDCEAWKSRVSD
SLLLRQNRSVYTYNDVMKETLSRFKFRGDAEIINAFKSDFSSTFSQVYPDKHFVLVPIPLSKEREEERGFNQARLLAECL
DRPIHHPLIRLNNEKQSKKKKTERLLSARIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGRAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=38220 BSUW23_RS17680 WP_013308058.1 3425965..3426687(-) (comFC) [Bacillus spizizenii str. W23]
ATGCCAAATGAAGCAGGAGGAGGCATTTATAAACTGATCTGTCTATTATGCGATTCGCCATTTTCTCAAGCTATTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGAAGAAAAGGTCTGCCATACCTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCACCCTGTGCGGCAGACCTCAATCCGTTCATGCGGTATGCAAAGATTGCGAAGCATGGAAATCAAGAGTCAGTGAC
AGCTTGCTGCTGCGCCAAAACCGTTCAGTTTACACATATAATGATGTGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCTTTTAAAAGTGATTTTTCTTCAACCTTTTCACAGGTTTACCCCGATAAGCATTTTG
TTCTTGTTCCTATTCCGCTTAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACGGCTCCTGGCAGAATGTTTA
GACCGGCCTATCCACCACCCCCTCATCCGCTTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGTCTGCTTTC
AGCGCGTATTTTTGATACAAAAAACAACTCAGCTGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAGAGCCGCTTCAGTGGCATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0U4A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90.417

100

0.904

Multiple sequence alignment