Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   HCN55_RS06790 Genome accession   NZ_CP050532
Coordinates   1309151..1310287 (+) Length   378 a.a.
NCBI ID   WP_010886491.1    Uniprot ID   Q00828
Organism   Bacillus subtilis subsp. subtilis str. SMY     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304151..1315287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCN55_RS06770 (HCN55_06775) uxaA 1304601..1306094 (+) 1494 WP_003245409.1 UxaA family hydrolase -
  HCN55_RS06775 (HCN55_06780) yjnA 1306133..1306897 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  HCN55_RS06780 (HCN55_06785) bstD 1307122..1307586 (-) 465 WP_003245144.1 DinB family protein -
  HCN55_RS06785 (HCN55_06790) yjoB 1307735..1309006 (+) 1272 WP_003245490.1 ATPase YjoB -
  HCN55_RS06790 (HCN55_06795) rapC 1309151..1310287 (+) 1137 WP_010886491.1 response regulator aspartate phosphatase RapA Regulator
  HCN55_RS06795 (HCN55_06800) phrA 1310277..1310411 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  HCN55_RS06800 (HCN55_06805) yjpA 1310442..1310699 (-) 258 WP_003232731.1 YciI family protein -
  HCN55_RS06805 (HCN55_06810) xlyB 1310820..1311773 (+) 954 WP_003244876.1 N-acetylmuramoyl-L-alanine amidase -
  HCN55_RS06810 (HCN55_06815) yjqA 1311813..1312190 (-) 378 WP_003245254.1 PH domain-containing protein -
  HCN55_RS06815 (HCN55_06820) pghB 1312296..1312898 (+) 603 WP_003244789.1 poly-gamma-glutamate hydrolase family protein -
  HCN55_RS06820 (HCN55_06825) xpdC 1312975..1313811 (+) 837 WP_003245071.1 manganese catalase family protein -
  HCN55_RS06825 (HCN55_06830) xkdA 1313855..1314451 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  HCN55_RS06830 (HCN55_06835) xre 1314614..1314955 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=381333 HCN55_RS06790 WP_010886491.1 1309151..1310287(+) (rapC) [Bacillus subtilis subsp. subtilis str. SMY]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=381333 HCN55_RS06790 WP_010886491.1 1309151..1310287(+) (rapC) [Bacillus subtilis subsp. subtilis str. SMY]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418