Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPIN_RS05990 Genome accession   NC_017372
Coordinates   1270829..1271878 (+) Length   349 a.a.
NCBI ID   WP_000115546.1    Uniprot ID   -
Organism   Helicobacter pylori India7     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1265829..1276878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPIN_RS05970 (HPIN_06255) - 1265956..1266699 (+) 744 WP_014536202.1 carbonic anhydrase -
  HPIN_RS05975 (HPIN_06260) - 1266930..1267976 (-) 1047 WP_000843773.1 DUF874 family protein -
  HPIN_RS05980 (HPIN_06265) asd 1268412..1269452 (-) 1041 WP_000860945.1 aspartate-semialdehyde dehydrogenase -
  HPIN_RS05985 (HPIN_06270) hisS 1269439..1270767 (-) 1329 WP_000632479.1 histidine--tRNA ligase -
  HPIN_RS05990 (HPIN_06275) waaF 1270829..1271878 (+) 1050 WP_000115546.1 lipopolysaccharide heptosyltransferase II Regulator
  HPIN_RS05995 (HPIN_06280) - 1272065..1272337 (-) 273 WP_000744166.1 hypothetical protein -
  HPIN_RS06000 (HPIN_06290) fusA 1272880..1274958 (-) 2079 WP_000101902.1 elongation factor G -
  HPIN_RS06005 (HPIN_06295) rpsG 1274970..1275437 (-) 468 WP_001254358.1 30S ribosomal protein S7 -
  HPIN_RS06010 (HPIN_06300) rpsL 1275453..1275860 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39295.00 Da        Isoelectric Point: 9.1426

>NTDB_id=38015 HPIN_RS05990 WP_000115546.1 1270829..1271878(+) (waaF) [Helicobacter pylori India7]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKNHYPNAHFVLVGPQITCELFKKDESIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMTAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAETAAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSR
NAYNLCGKTSIEELIECIAVLDLFITNDSGPMHAAASAQTPLIALFGPTDEKETCPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSIAPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=38015 HPIN_RS05990 WP_000115546.1 1270829..1271878(+) (waaF) [Helicobacter pylori India7]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAAAACCACTACCCTAACGCGCATTTTGTCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAGCATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTCGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATAATGACTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAATACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAACCGCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCCTTATTATCCCGT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTAATAGAGTGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGCGGCTGCCAGTGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTTGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCGCGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361

Multiple sequence alignment