Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   HB731_RS10055 Genome accession   NZ_CP050331
Coordinates   2149562..2149918 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain DVT414     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2144562..2154918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB731_RS10030 (HB731_10050) fabF 2144774..2146018 (+) 1245 WP_023115233.1 beta-ketoacyl-ACP synthase II -
  HB731_RS10035 (HB731_10055) pabC 2146018..2146833 (+) 816 WP_003452483.1 aminodeoxychorismate lyase -
  HB731_RS10040 (HB731_10060) mltG 2146839..2147888 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  HB731_RS10045 (HB731_10065) tmk 2147917..2148549 (+) 633 WP_003091125.1 dTMP kinase -
  HB731_RS10050 (HB731_10070) - 2148542..2149528 (+) 987 WP_003110200.1 DNA polymerase III subunit delta' -
  HB731_RS10055 (HB731_10075) pilZ 2149562..2149918 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  HB731_RS10060 (HB731_10080) - 2149933..2150709 (+) 777 WP_003091117.1 TatD family hydrolase -
  HB731_RS10065 (HB731_10085) - 2150935..2152068 (-) 1134 WP_016263280.1 aminotransferase class V-fold PLP-dependent enzyme -
  HB731_RS10070 (HB731_10090) - 2152154..2152792 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  HB731_RS10075 (HB731_10095) - 2152942..2153838 (+) 897 WP_003091113.1 radical SAM protein -
  HB731_RS10080 (HB731_10100) - 2153903..2154535 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=378967 HB731_RS10055 WP_003091119.1 2149562..2149918(+) (pilZ) [Pseudomonas aeruginosa strain DVT414]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=378967 HB731_RS10055 WP_003091119.1 2149562..2149918(+) (pilZ) [Pseudomonas aeruginosa strain DVT414]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449