Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPF57_RS05895 Genome accession   NC_017367
Coordinates   1233116..1234165 (+) Length   349 a.a.
NCBI ID   WP_000115487.1    Uniprot ID   -
Organism   Helicobacter pylori F57     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1228116..1239165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF57_RS05880 (HPF57_1151) - 1229110..1230273 (-) 1164 WP_001144164.1 DUF874 family protein -
  HPF57_RS05885 (HPF57_1152) asd 1230699..1231739 (-) 1041 WP_000860907.1 aspartate-semialdehyde dehydrogenase -
  HPF57_RS05890 (HPF57_1153) hisS 1231726..1233054 (-) 1329 WP_000632536.1 histidine--tRNA ligase -
  HPF57_RS05895 (HPF57_1154) waaF 1233116..1234165 (+) 1050 WP_000115487.1 lipopolysaccharide heptosyltransferase II Regulator
  HPF57_RS05900 (HPF57_1155) - 1234359..1234793 (-) 435 WP_000744159.1 hypothetical protein -
  HPF57_RS05910 (HPF57_1156) fusA 1235327..1237405 (-) 2079 WP_000101843.1 elongation factor G -
  HPF57_RS05915 (HPF57_1157) rpsG 1237417..1237884 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HPF57_RS05920 (HPF57_1158) rpsL 1237900..1238307 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39514.37 Da        Isoelectric Point: 9.7383

>NTDB_id=37887 HPF57_RS05895 WP_000115487.1 1233116..1234165(+) (waaF) [Helicobacter pylori F57]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGTKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHAAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=37887 HPF57_RS05895 WP_000115487.1 1233116..1234165(+) (waaF) [Helicobacter pylori F57]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAATGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGACTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTATTAAAAAACCCCTTATTGTTCAAT
AACGCTTACAATCTGTGCGGAAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361

Multiple sequence alignment