Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CS053_RS13935 | Genome accession | NZ_CP042807 |
| Coordinates | 3132468..3133610 (+) | Length | 380 a.a. |
| NCBI ID | WP_147627847.1 | Uniprot ID | A0A5B9E153 |
| Organism | Rhodanobacter glycinis strain T01E-68 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3127468..3138610
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS053_RS13905 (CS053_13905) | - | 3127737..3128591 (-) | 855 | WP_147627842.1 | MBL fold metallo-hydrolase | - |
| CS053_RS13910 (CS053_13910) | ggt | 3128649..3130376 (-) | 1728 | WP_147627843.1 | gamma-glutamyltransferase | - |
| CS053_RS13915 (CS053_13915) | - | 3130373..3130627 (-) | 255 | WP_147627844.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| CS053_RS13920 (CS053_13920) | - | 3130740..3131243 (-) | 504 | WP_147627845.1 | hypothetical protein | - |
| CS053_RS13925 (CS053_13925) | coaD | 3131236..3131775 (-) | 540 | WP_037100952.1 | pantetheine-phosphate adenylyltransferase | - |
| CS053_RS13930 (CS053_13930) | rsmD | 3131806..3132381 (-) | 576 | WP_147627846.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| CS053_RS13935 (CS053_13935) | pilA | 3132468..3133610 (+) | 1143 | WP_147627847.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| CS053_RS13940 (CS053_13940) | - | 3133607..3134701 (+) | 1095 | WP_172624080.1 | AsmA family protein | - |
| CS053_RS13945 (CS053_13945) | mutY | 3134698..3135744 (+) | 1047 | WP_147627848.1 | A/G-specific adenine glycosylase | - |
| CS053_RS13950 (CS053_13950) | - | 3135758..3136036 (+) | 279 | WP_008213614.1 | oxidative damage protection protein | - |
| CS053_RS13960 (CS053_13960) | - | 3136434..3137483 (-) | 1050 | WP_147627849.1 | AraC family transcriptional regulator | - |
| CS053_RS18795 | - | 3137636..3138376 (+) | 741 | WP_253260736.1 | AMP-binding protein | - |
Sequence
Protein
Download Length: 380 a.a. Molecular weight: 40435.25 Da Isoelectric Point: 5.1805
>NTDB_id=378700 CS053_RS13935 WP_147627847.1 3132468..3133610(+) (pilA) [Rhodanobacter glycinis strain T01E-68]
MLKFWKKKPAGTTPEQPADAPASPSVEDNESVAETPAVTPITAVEPAPGPGMDPVASEPVVVEPVPEAPAAPAEPARRGW
RDRLSGSGFARGLSSLFVRHPKLDDDLLDELETILITADVGIETSTELVENLRARMHKREFADADALLAALRQALLVRLA
PVEKPLDVGDRLPFVILTVGINGVGKTTTIGKLARRYRDEGREVLLAAGDTFRAAAVEQLKTWGARNSVPVISQGQDADS
ASVIFDALQTARARGTNVLIADTAGRLHTQGGLMDELGKIARVLKKLDPEAPHEVLMVIDGTTGQNALSQLRQFRQIVGV
TGLVVTKLDGTAKGGVVFALAREFGLPIRYVGLGEGATDLRTFNAEAFVDGLLPPRLGQP
MLKFWKKKPAGTTPEQPADAPASPSVEDNESVAETPAVTPITAVEPAPGPGMDPVASEPVVVEPVPEAPAAPAEPARRGW
RDRLSGSGFARGLSSLFVRHPKLDDDLLDELETILITADVGIETSTELVENLRARMHKREFADADALLAALRQALLVRLA
PVEKPLDVGDRLPFVILTVGINGVGKTTTIGKLARRYRDEGREVLLAAGDTFRAAAVEQLKTWGARNSVPVISQGQDADS
ASVIFDALQTARARGTNVLIADTAGRLHTQGGLMDELGKIARVLKKLDPEAPHEVLMVIDGTTGQNALSQLRQFRQIVGV
TGLVVTKLDGTAKGGVVFALAREFGLPIRYVGLGEGATDLRTFNAEAFVDGLLPPRLGQP
Nucleotide
Download Length: 1143 bp
>NTDB_id=378700 CS053_RS13935 WP_147627847.1 3132468..3133610(+) (pilA) [Rhodanobacter glycinis strain T01E-68]
ATGCTCAAGTTCTGGAAGAAAAAACCCGCCGGCACGACGCCCGAGCAGCCTGCCGACGCGCCGGCCTCGCCATCCGTCGA
GGACAACGAAAGCGTTGCCGAAACCCCTGCCGTCACGCCGATAACGGCGGTTGAGCCCGCGCCCGGGCCGGGCATGGACC
CGGTTGCGAGCGAACCCGTCGTCGTCGAGCCGGTTCCCGAGGCTCCGGCTGCACCCGCCGAACCGGCCCGGCGCGGCTGG
CGTGACCGGCTGTCCGGCAGCGGCTTCGCGCGTGGATTGAGCTCGCTGTTCGTGCGCCACCCCAAGCTCGACGACGACCT
GCTCGACGAGCTGGAAACCATCCTGATTACCGCCGATGTCGGCATCGAAACCAGCACCGAGCTGGTGGAAAACCTGCGCG
CACGCATGCACAAGCGCGAGTTCGCCGACGCCGACGCCCTGCTGGCAGCGCTGCGCCAGGCCCTTCTGGTGCGCCTGGCG
CCCGTCGAAAAGCCGCTGGACGTGGGCGATCGCCTGCCGTTCGTGATCCTCACCGTGGGCATCAATGGCGTCGGCAAGAC
CACCACCATCGGCAAGCTGGCGCGCCGCTATCGTGACGAAGGCCGCGAAGTGCTACTGGCCGCCGGCGACACCTTCCGTG
CCGCCGCCGTCGAACAGCTCAAGACCTGGGGCGCACGCAACAGCGTGCCAGTGATCTCGCAGGGCCAGGATGCCGATTCG
GCCAGTGTGATCTTCGATGCCCTGCAGACCGCGCGTGCGCGCGGCACCAACGTGCTGATCGCCGACACCGCCGGCCGTCT
GCACACCCAGGGCGGCCTGATGGACGAGCTTGGCAAGATCGCCCGCGTGCTGAAGAAGCTCGACCCGGAAGCGCCGCACG
AAGTGCTGATGGTGATCGACGGCACCACCGGCCAGAACGCGCTCAGCCAGTTGCGCCAGTTCCGCCAGATCGTCGGCGTC
ACCGGCCTGGTGGTGACCAAGCTGGATGGCACCGCCAAGGGCGGCGTCGTATTTGCGCTGGCCCGCGAGTTCGGCCTGCC
GATTCGCTATGTCGGCCTCGGCGAGGGGGCCACCGACCTGCGCACCTTCAATGCCGAGGCCTTCGTCGACGGCCTGCTGC
CTCCGCGCCTCGGCCAGCCATGA
ATGCTCAAGTTCTGGAAGAAAAAACCCGCCGGCACGACGCCCGAGCAGCCTGCCGACGCGCCGGCCTCGCCATCCGTCGA
GGACAACGAAAGCGTTGCCGAAACCCCTGCCGTCACGCCGATAACGGCGGTTGAGCCCGCGCCCGGGCCGGGCATGGACC
CGGTTGCGAGCGAACCCGTCGTCGTCGAGCCGGTTCCCGAGGCTCCGGCTGCACCCGCCGAACCGGCCCGGCGCGGCTGG
CGTGACCGGCTGTCCGGCAGCGGCTTCGCGCGTGGATTGAGCTCGCTGTTCGTGCGCCACCCCAAGCTCGACGACGACCT
GCTCGACGAGCTGGAAACCATCCTGATTACCGCCGATGTCGGCATCGAAACCAGCACCGAGCTGGTGGAAAACCTGCGCG
CACGCATGCACAAGCGCGAGTTCGCCGACGCCGACGCCCTGCTGGCAGCGCTGCGCCAGGCCCTTCTGGTGCGCCTGGCG
CCCGTCGAAAAGCCGCTGGACGTGGGCGATCGCCTGCCGTTCGTGATCCTCACCGTGGGCATCAATGGCGTCGGCAAGAC
CACCACCATCGGCAAGCTGGCGCGCCGCTATCGTGACGAAGGCCGCGAAGTGCTACTGGCCGCCGGCGACACCTTCCGTG
CCGCCGCCGTCGAACAGCTCAAGACCTGGGGCGCACGCAACAGCGTGCCAGTGATCTCGCAGGGCCAGGATGCCGATTCG
GCCAGTGTGATCTTCGATGCCCTGCAGACCGCGCGTGCGCGCGGCACCAACGTGCTGATCGCCGACACCGCCGGCCGTCT
GCACACCCAGGGCGGCCTGATGGACGAGCTTGGCAAGATCGCCCGCGTGCTGAAGAAGCTCGACCCGGAAGCGCCGCACG
AAGTGCTGATGGTGATCGACGGCACCACCGGCCAGAACGCGCTCAGCCAGTTGCGCCAGTTCCGCCAGATCGTCGGCGTC
ACCGGCCTGGTGGTGACCAAGCTGGATGGCACCGCCAAGGGCGGCGTCGTATTTGCGCTGGCCCGCGAGTTCGGCCTGCC
GATTCGCTATGTCGGCCTCGGCGAGGGGGCCACCGACCTGCGCACCTTCAATGCCGAGGCCTTCGTCGACGGCCTGCTGC
CTCCGCGCCTCGGCCAGCCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
44.019 |
100 |
0.484 |