Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HB744_RS24820 Genome accession   NZ_CP050323
Coordinates   5257542..5257871 (-) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain DVT429     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5252542..5262871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB744_RS24805 (HB744_24885) uvrB 5253929..5255941 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  HB744_RS24810 (HB744_24890) - 5256129..5257325 (+) 1197 WP_174713246.1 amino acid aminotransferase -
  HB744_RS24820 (HB744_24900) comEA/comE1 5257542..5257871 (-) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  HB744_RS24825 (HB744_24905) - 5258062..5260059 (-) 1998 WP_023085415.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  HB744_RS24830 (HB744_24910) - 5260190..5261215 (-) 1026 WP_033940166.1 glycosyltransferase family 4 protein -
  HB744_RS24835 (HB744_24915) - 5261212..5262171 (-) 960 WP_071537470.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=378305 HB744_RS24820 WP_003138486.1 5257542..5257871(-) (comEA/comE1) [Pseudomonas aeruginosa strain DVT429]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=378305 HB744_RS24820 WP_003138486.1 5257542..5257871(-) (comEA/comE1) [Pseudomonas aeruginosa strain DVT429]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385