Detailed information NTG0376852

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FLM39_RS10215
• Genome accession: NZ_CP042310
• Coordinates: 2087903..2088703 (-)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 103-17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2082903..2093703

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FLM39_RS10195	dksA	2083483..2083938 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
FLM39_RS10200	sfsA	2084101..2084817 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
FLM39_RS10205	thpR	2084817..2085353 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
FLM39_RS10210	hrpB	2085426..2087855 (+)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
FLM39_RS10215	pilD	2087903..2088703 (-)	801	WP_002888947.1	A24 family peptidase	Machinery gene
FLM39_RS10220	-	2088700..2089446 (-)	747	WP_004145897.1	type II secretion system protein N	-
FLM39_RS10225	-	2089436..2089921 (-)	486	WP_004151943.1	type II secretion system protein M	-
FLM39_RS10230	gspL	2089914..2091107 (-)	1194	WP_004151942.1	type II secretion system protein GspL	-
FLM39_RS10235	gspK	2091094..2092080 (-)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
FLM39_RS10240	gspJ	2092077..2092673 (-)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
FLM39_RS10245	gspI	2092670..2093035 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
FLM39_RS10250	gspH	2093032..2093547 (-)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=376852 FLM39_RS10215 WP_002888947.1 2087903..2088703(-) (pilD) [Klebsiella pneumoniae strain 103-17]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=376852 FLM39_RS10215 WP_002888947.1 2087903..2088703(-) (pilD) [Klebsiella pneumoniae strain 103-17]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425