Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   G4G26_RS18620 Genome accession   NZ_CP049924
Coordinates   3637390..3638523 (-) Length   377 a.a.
NCBI ID   WP_014478242.1    Uniprot ID   -
Organism   Bacillus subtilis strain So1b     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3632390..3643523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS18580 (G4G26_18635) ywnA 3632549..3632950 (-) 402 WP_015714861.1 Rrf2 family transcriptional regulator -
  G4G26_RS18585 (G4G26_18640) ureC 3633085..3634794 (-) 1710 WP_003243090.1 urease subunit alpha -
  G4G26_RS18590 (G4G26_18645) ureB 3634791..3635165 (-) 375 WP_163259933.1 urease subunit beta -
  G4G26_RS18595 (G4G26_18650) ureA 3635162..3635479 (-) 318 WP_003227724.1 urease subunit gamma -
  G4G26_RS18600 (G4G26_18655) - 3635674..3635833 (-) 160 Protein_3629 hypothetical protein -
  G4G26_RS21075 - 3636110..3636278 (-) 169 Protein_3630 urea ABC transporter substrate-binding protein -
  G4G26_RS18610 (G4G26_18665) csbD 3636494..3636682 (-) 189 WP_003227718.1 stress response protein CsbD -
  G4G26_RS18615 (G4G26_18670) - 3636755..3637234 (-) 480 WP_003244390.1 hypothetical protein -
  G4G26_RS18620 (G4G26_18675) rapC 3637390..3638523 (-) 1134 WP_014478242.1 response regulator aspartate phosphatase RapB Regulator
  G4G26_RS18625 (G4G26_18680) moaA 3638715..3639740 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  G4G26_RS18630 (G4G26_18685) fdhD 3639756..3640544 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  G4G26_RS18635 (G4G26_18690) - 3640777..3640938 (-) 162 WP_003227706.1 hypothetical protein -
  G4G26_RS18640 (G4G26_18695) ywmD 3641033..3641707 (-) 675 WP_003243553.1 VWA domain-containing protein -
  G4G26_RS18645 (G4G26_18700) - 3641760..3641900 (-) 141 WP_014478246.1 hypothetical protein -
  G4G26_RS18650 (G4G26_18705) ywmC 3642031..3642714 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.7975

>NTDB_id=375703 G4G26_RS18620 WP_014478242.1 3637390..3638523(-) (rapC) [Bacillus subtilis strain So1b]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=375703 G4G26_RS18620 WP_014478242.1 3637390..3638523(-) (rapC) [Bacillus subtilis strain So1b]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAGCATTTGGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment