Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   G6536_RS05905 Genome accession   NZ_CP049330
Coordinates   1163588..1163815 (+) Length   75 a.a.
NCBI ID   WP_123032305.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1158588..1168815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6536_RS05880 (G6536_05975) comK 1158817..1159395 (+) 579 WP_003180354.1 competence protein ComK Regulator
  G6536_RS05885 (G6536_05980) - 1159389..1159754 (-) 366 WP_003180357.1 hypothetical protein -
  G6536_RS05890 (G6536_05985) - 1159963..1160574 (+) 612 WP_003180359.1 TVP38/TMEM64 family protein -
  G6536_RS05895 (G6536_05990) lepB 1160587..1161105 (+) 519 WP_145645330.1 signal peptidase I -
  G6536_RS05900 (G6536_05995) - 1161234..1163009 (-) 1776 WP_207185294.1 S8 family peptidase -
  G6536_RS05905 (G6536_06000) ysxA/radC 1163588..1163815 (+) 228 WP_123032305.1 JAB domain-containing protein Machinery gene
  G6536_RS05910 (G6536_06005) - 1164033..1165973 (+) 1941 WP_006636730.1 site-specific DNA-methyltransferase -
  G6536_RS05915 (G6536_06010) - 1165976..1168678 (+) 2703 WP_065643341.1 DEAD/DEAH box helicase family protein -

Sequence

Protein


Download         Length: 75 a.a.        Molecular weight: 8249.73 Da        Isoelectric Point: 8.7878

>NTDB_id=373529 G6536_RS05905 WP_123032305.1 1163588..1163815(+) (ysxA/radC) [Bacillus licheniformis strain CP6]
MIVKCFLLCVLNTKNNVVAVHRCHIGSLNSSIVHPREVYKSAILNNAASVILAHQHPSGDIKPSMEDINVTKIFV

Nucleotide


Download         Length: 228 bp        

>NTDB_id=373529 G6536_RS05905 WP_123032305.1 1163588..1163815(+) (ysxA/radC) [Bacillus licheniformis strain CP6]
ATGATCGTGAAGTGTTTTTTGTTATGTGTTTTAAATACGAAAAATAATGTTGTTGCAGTTCACCGTTGTCATATTGGTTC
TTTGAATTCCTCGATTGTACATCCTCGGGAGGTGTATAAATCAGCAATACTTAATAATGCAGCAAGTGTCATTCTTGCGC
ATCAGCATCCAAGTGGTGACATTAAACCGTCGATGGAAGATATAAACGTCACAAAAATATTTGTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(5-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

59.701

89.333

0.533
  radC Streptococcus pneumoniae TIGR4

46.032

84

0.387
  radC Streptococcus gordonii str. Challis substr. CH1

45.161

82.667

0.373
  radC Streptococcus pneumoniae R6

44.444

84

0.373
  radC Streptococcus pneumoniae D39

44.444

84

0.373
  radC Haemophilus influenzae Rd KW20

40.299

89.333

0.36