Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   G6Z52_RS06180 Genome accession   NZ_CP049187
Coordinates   1268635..1269300 (-) Length   221 a.a.
NCBI ID   WP_002983685.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1687     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1263635..1274300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z52_RS06175 (G6Z52_06210) raiA 1268007..1268555 (-) 549 WP_002988974.1 ribosome-associated translation inhibitor RaiA -
  G6Z52_RS06180 (G6Z52_06215) comFC/cflB 1268635..1269300 (-) 666 WP_002983685.1 ComF family protein Machinery gene
  G6Z52_RS06185 (G6Z52_06220) comFA/cflA 1269272..1270597 (-) 1326 WP_002988971.1 DEAD/DEAH box helicase Machinery gene
  G6Z52_RS06190 (G6Z52_06225) - 1270652..1271284 (+) 633 WP_002988970.1 YigZ family protein -
  G6Z52_RS06195 (G6Z52_06230) cysK 1271412..1272353 (+) 942 WP_002988967.1 cysteine synthase A -
  G6Z52_RS06200 (G6Z52_06235) - 1272371..1272748 (-) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  G6Z52_RS06205 (G6Z52_06240) - 1272748..1274148 (-) 1401 WP_002983672.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25163.41 Da        Isoelectric Point: 9.4626

>NTDB_id=372855 G6Z52_RS06180 WP_002983685.1 1268635..1269300(-) (comFC/cflB) [Streptococcus pyogenes strain TSPY1687]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=372855 G6Z52_RS06180 WP_002983685.1 1268635..1269300(-) (comFC/cflB) [Streptococcus pyogenes strain TSPY1687]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412