Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   WPAWT_RS26150 Genome accession   NZ_CP049161
Coordinates   5687412..5687936 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain MS14403     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5682412..5692936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WPAWT_RS26135 (WPAWT_05219) aroB 5683540..5684646 (-) 1107 WP_171978695.1 3-dehydroquinate synthase -
  WPAWT_RS26140 (WPAWT_05220) aroK 5684696..5685214 (-) 519 WP_003095833.1 shikimate kinase AroK -
  WPAWT_RS26145 (WPAWT_05221) pilQ 5685226..5687358 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  WPAWT_RS26150 (WPAWT_05222) comL/pilP 5687412..5687936 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  WPAWT_RS26155 (WPAWT_05223) pilO 5687933..5688556 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  WPAWT_RS26160 (WPAWT_05224) pilN 5688553..5689149 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  WPAWT_RS26165 (WPAWT_05225) pilM 5689149..5690213 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  WPAWT_RS26170 (WPAWT_05226) - 5690398..5692869 (+) 2472 WP_171978696.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=372775 WPAWT_RS26150 WP_003116136.1 5687412..5687936(-) (comL/pilP) [Pseudomonas aeruginosa strain MS14403]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=372775 WPAWT_RS26150 WP_003116136.1 5687412..5687936(-) (comL/pilP) [Pseudomonas aeruginosa strain MS14403]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362