Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FKQ53_RS20270 | Genome accession | NZ_CP041237 |
| Coordinates | 4586060..4586581 (-) | Length | 173 a.a. |
| NCBI ID | WP_023594269.1 | Uniprot ID | A0A5E4U5T4 |
| Organism | Pandoraea pnomenusa strain M202 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 4581060..4591581
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FKQ53_RS20250 (FKQ53_20250) | - | 4581327..4582868 (-) | 1542 | WP_141572435.1 | hypothetical protein | - |
| FKQ53_RS20255 (FKQ53_20255) | - | 4582908..4583078 (-) | 171 | WP_006400971.1 | rubredoxin | - |
| FKQ53_RS20260 (FKQ53_20260) | - | 4583289..4584128 (+) | 840 | WP_023872296.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| FKQ53_RS20265 (FKQ53_20265) | - | 4584206..4585975 (-) | 1770 | WP_141572437.1 | O-antigen ligase family protein | - |
| FKQ53_RS20270 (FKQ53_20270) | pilA | 4586060..4586581 (-) | 522 | WP_023594269.1 | pilin | Machinery gene |
| FKQ53_RS20275 (FKQ53_20275) | - | 4586830..4587558 (-) | 729 | WP_023594268.1 | TerC family protein | - |
| FKQ53_RS20280 (FKQ53_20280) | sucD | 4587761..4588642 (-) | 882 | WP_023594267.1 | succinate--CoA ligase subunit alpha | - |
| FKQ53_RS20285 (FKQ53_20285) | sucC | 4588724..4589890 (-) | 1167 | WP_023594266.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| FKQ53_RS20290 (FKQ53_20290) | - | 4589887..4590573 (-) | 687 | WP_023594265.1 | DUF2889 domain-containing protein | - |
| FKQ53_RS20295 (FKQ53_20295) | recX | 4590893..4591438 (-) | 546 | WP_023594264.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 17654.27 Da Isoelectric Point: 9.8858
>NTDB_id=370753 FKQ53_RS20270 WP_023594269.1 4586060..4586581(-) (pilA) [Pandoraea pnomenusa strain M202]
MRRFGHRTTGLAKSRGFTLIELMIVLAIIGVLVTAGVPYLQNYLVRARVVEGLGAAASAKALVSENAMHGAPFNSGWQAP
SATDNVNAVTIDSVSGNVTVAYTQRAGDGALVLVPTSAGPDGKPMALTVGKAPEGQIVWTCYAQGREGAPGGATLPAKLA
PPECRGAATQRGA
MRRFGHRTTGLAKSRGFTLIELMIVLAIIGVLVTAGVPYLQNYLVRARVVEGLGAAASAKALVSENAMHGAPFNSGWQAP
SATDNVNAVTIDSVSGNVTVAYTQRAGDGALVLVPTSAGPDGKPMALTVGKAPEGQIVWTCYAQGREGAPGGATLPAKLA
PPECRGAATQRGA
Nucleotide
Download Length: 522 bp
>NTDB_id=370753 FKQ53_RS20270 WP_023594269.1 4586060..4586581(-) (pilA) [Pandoraea pnomenusa strain M202]
ATGCGTCGTTTCGGCCACCGGACCACCGGTCTCGCCAAATCCCGGGGATTCACCCTGATCGAGCTGATGATCGTGCTGGC
GATCATCGGCGTGTTGGTCACGGCAGGGGTTCCGTATCTGCAAAACTATCTGGTGCGTGCGCGTGTCGTCGAGGGACTGG
GCGCGGCCGCGTCGGCCAAGGCGCTCGTGAGCGAGAACGCCATGCACGGCGCCCCATTCAATAGCGGTTGGCAAGCGCCG
AGTGCGACCGACAACGTGAACGCCGTGACCATCGACTCGGTGAGCGGCAACGTCACGGTCGCCTACACCCAGCGCGCTGG
CGACGGTGCTCTGGTGCTGGTGCCCACGAGCGCCGGTCCCGACGGCAAGCCCATGGCGCTGACGGTCGGCAAGGCGCCTG
AAGGCCAGATCGTATGGACGTGTTACGCACAAGGTCGCGAGGGCGCACCCGGCGGTGCCACGCTGCCCGCGAAGCTCGCG
CCTCCCGAGTGCCGTGGCGCGGCGACCCAGCGGGGCGCCTGA
ATGCGTCGTTTCGGCCACCGGACCACCGGTCTCGCCAAATCCCGGGGATTCACCCTGATCGAGCTGATGATCGTGCTGGC
GATCATCGGCGTGTTGGTCACGGCAGGGGTTCCGTATCTGCAAAACTATCTGGTGCGTGCGCGTGTCGTCGAGGGACTGG
GCGCGGCCGCGTCGGCCAAGGCGCTCGTGAGCGAGAACGCCATGCACGGCGCCCCATTCAATAGCGGTTGGCAAGCGCCG
AGTGCGACCGACAACGTGAACGCCGTGACCATCGACTCGGTGAGCGGCAACGTCACGGTCGCCTACACCCAGCGCGCTGG
CGACGGTGCTCTGGTGCTGGTGCCCACGAGCGCCGGTCCCGACGGCAAGCCCATGGCGCTGACGGTCGGCAAGGCGCCTG
AAGGCCAGATCGTATGGACGTGTTACGCACAAGGTCGCGAGGGCGCACCCGGCGGTGCCACGCTGCCCGCGAAGCTCGCG
CCTCCCGAGTGCCGTGGCGCGGCGACCCAGCGGGGCGCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
48 |
100 |
0.486 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
34.375 |
100 |
0.382 |
| pilA2 | Legionella pneumophila str. Paris |
39.873 |
91.329 |
0.364 |