Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FFV09_RS10540 Genome accession   NZ_CP041217
Coordinates   2528125..2528685 (-) Length   186 a.a.
NCBI ID   WP_141447797.1    Uniprot ID   -
Organism   Saccharibacillus brassicae strain ATSA2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2523125..2533685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFV09_RS10520 (FFV09_10520) opp4C 2523305..2524213 (-) 909 WP_141450426.1 oligopeptide ABC transporter permease -
  FFV09_RS10525 (FFV09_10525) - 2524248..2525210 (-) 963 WP_141447795.1 ABC transporter permease -
  FFV09_RS10530 (FFV09_10530) - 2525304..2527070 (-) 1767 WP_141447796.1 ABC transporter substrate-binding protein -
  FFV09_RS10535 (FFV09_10535) rpsR 2527828..2528103 (-) 276 WP_018976953.1 30S ribosomal protein S18 -
  FFV09_RS10540 (FFV09_10540) ssbA 2528125..2528685 (-) 561 WP_141447797.1 single-stranded DNA-binding protein Machinery gene
  FFV09_RS10545 (FFV09_10545) rpsF 2528769..2529059 (-) 291 WP_141447798.1 30S ribosomal protein S6 -
  FFV09_RS10555 (FFV09_10555) - 2529506..2529718 (-) 213 WP_141447799.1 DUF951 domain-containing protein -
  FFV09_RS10560 (FFV09_10560) - 2529737..2530888 (-) 1152 WP_141447800.1 mechanosensitive ion channel family protein -
  FFV09_RS10565 (FFV09_10565) - 2530981..2531232 (-) 252 WP_246098525.1 DUF3343 domain-containing protein -
  FFV09_RS10570 (FFV09_10570) - 2531229..2531735 (-) 507 WP_141447801.1 DUF4446 family protein -
  FFV09_RS10575 (FFV09_10575) - 2531945..2533117 (-) 1173 WP_141447802.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19679.33 Da        Isoelectric Point: 4.8700

>NTDB_id=370643 FFV09_RS10540 WP_141447797.1 2528125..2528685(-) (ssbA) [Saccharibacillus brassicae strain ATSA2]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTIAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESPNREGGGGSGREESSSNGGGNSGSSNSGGGNRPEPSYGGGGGGGNRGGGSQAPRG
GGSSNNQDPFSDDGRPIDISDDDLPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=370643 FFV09_RS10540 WP_141447797.1 2528125..2528685(-) (ssbA) [Saccharibacillus brassicae strain ATSA2]
ATGTTGAACCGAGTCATTTTGATCGGCCGGCTGACACGTGACCCTGAGCTGCGGTACACGCCTGCGGGCGTAGCCGTAAC
CCAGTTTACGATTGCAGTCGACCGTCCGTTTACGAGCCAGGGTGGAGAACGCGAAGCGGACTTCATTCCGGTAGTCACCT
GGCGCCAACTGGCGGAGACCTGCGCAAACTACTTGCGTAAGGGACGTCTGACGGCGGTGGAAGGCCGTATTCAAGTACGG
AACTACGAGAATAACGAAGGCAAACGTGTATACGTAACCGAAGTTATTGCCGATAATGTCCGTTTCCTGGAATCGCCGAA
CCGCGAAGGCGGCGGCGGATCGGGCCGCGAAGAGTCGTCTTCCAATGGAGGCGGCAACAGTGGCAGCAGCAATAGCGGCG
GCGGAAATCGTCCCGAACCATCTTACGGTGGTGGCGGAGGCGGCGGAAATCGCGGCGGCGGCAGCCAAGCTCCTCGTGGA
GGCGGCAGCAGCAACAATCAGGATCCTTTTTCCGATGACGGAAGACCGATCGATATTTCGGATGACGACCTGCCATTCTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.376

100

0.554
  ssb Latilactobacillus sakei subsp. sakei 23K

48.168

100

0.495

Multiple sequence alignment