Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GCO85_RS13755 Genome accession   NZ_CP048618
Coordinates   3086419..3087669 (+) Length   416 a.a.
NCBI ID   WP_061637166.1    Uniprot ID   -
Organism   Legionella pneumophila strain ERS1305867     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3081419..3092669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCO85_RS13720 (GCO85_13730) - 3081728..3082027 (-) 300 WP_011947628.1 metalloregulator ArsR/SmtB family transcription factor -
  GCO85_RS13725 (GCO85_13735) - 3082280..3082624 (-) 345 WP_061637165.1 hypothetical protein -
  GCO85_RS13730 (GCO85_13740) - 3082741..3083370 (+) 630 WP_010948424.1 trimeric intracellular cation channel family protein -
  GCO85_RS13735 (GCO85_13745) - 3083580..3084074 (-) 495 WP_014844810.1 peptidylprolyl isomerase -
  GCO85_RS13740 (GCO85_13750) tgt 3084101..3085252 (-) 1152 WP_027225428.1 tRNA guanosine(34) transglycosylase Tgt -
  GCO85_RS13745 (GCO85_13755) - 3085314..3085805 (-) 492 WP_014844812.1 disulfide bond formation protein B -
  GCO85_RS13750 (GCO85_13760) - 3085802..3086230 (-) 429 WP_014842763.1 c-type cytochrome -
  GCO85_RS13755 (GCO85_13765) cqsA 3086419..3087669 (+) 1251 WP_061637166.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  GCO85_RS13760 (GCO85_13770) - 3087750..3088775 (-) 1026 WP_010948430.1 response regulator -
  GCO85_RS13765 (GCO85_13775) - 3089057..3089620 (+) 564 WP_027225430.1 HdeD family acid-resistance protein -
  GCO85_RS13770 (GCO85_13780) - 3089708..3090997 (-) 1290 WP_010948432.1 HAMP domain-containing sensor histidine kinase -
  GCO85_RS13775 (GCO85_13785) hemC 3091388..3092317 (+) 930 WP_061637167.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46029.54 Da        Isoelectric Point: 8.9804

>NTDB_id=370119 GCO85_RS13755 WP_061637166.1 3086419..3087669(+) (cqsA) [Legionella pneumophila strain ERS1305867]
MSNTEYQTIDNETQYINGKEKHQNHAYPEYINHSMEKYYEGRVNKSWQGKHILKGKTPTANSLIFSSNDYLSISQHPQLI
KAQIAAMQKYGNGQMQSAVFLNNSSFLLSQCEKKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
GVKAARAKPIPFLHNSVDSLKKRIEHHGPGIIAVDSIYSTLGTISPLADYADIARKFKCLLIVDESHSLGTHGSQGKGMV
AKLGLSSQIDIITASLAKALSGRGGIITGDRQLIEYIRYSSLPSIFSSALMPHDLAGFSASLEIITQEEWRRAKLQTNAD
FLREALSCEGINIGSSGSQIVPLVTGSEANTLWLRDELEKEDLFGAVFCSPATPKNKCLIRLSISANHEKSDLLRVIECL
AKLARKRPDIPLFKGN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=370119 GCO85_RS13755 WP_061637166.1 3086419..3087669(+) (cqsA) [Legionella pneumophila strain ERS1305867]
ATGAGCAATACAGAATACCAAACAATTGATAACGAGACTCAATACATCAATGGAAAAGAAAAACATCAAAACCATGCTTA
TCCTGAGTACATCAATCATTCCATGGAAAAATATTACGAGGGGCGAGTCAATAAATCCTGGCAAGGGAAACACATACTTA
AAGGCAAAACCCCGACTGCAAATTCACTGATTTTTTCGAGCAATGATTATTTAAGCATCAGTCAACATCCGCAATTAATT
AAAGCGCAAATTGCTGCGATGCAAAAATATGGTAATGGTCAAATGCAATCCGCTGTATTTTTAAATAACAGCTCTTTTTT
ACTCAGCCAATGTGAAAAGAAATTCAGTTCCTTTTTAAATTATTCTGCGGCCCTGCTCACTCAATCAGGCTGGAGCGCTA
ACGTTGGTCTCATACAAACCCTGGCCAAGTACAATACACCAGTGTATCTGGATTTTTATGCCCATATGTCTTTTTGGTCT
GGTGTAAAAGCAGCAAGAGCCAAACCTATACCTTTTCTACATAATTCAGTCGATTCACTAAAAAAACGAATTGAACACCA
TGGACCAGGAATAATTGCAGTAGATTCTATTTATAGTACGCTGGGTACGATTAGTCCATTGGCTGACTATGCTGACATTG
CAAGAAAATTCAAATGTTTACTCATCGTCGATGAATCTCATTCATTAGGTACGCATGGCTCGCAAGGCAAGGGAATGGTG
GCTAAACTGGGATTATCAAGCCAAATAGACATCATAACAGCAAGCCTGGCTAAAGCCTTATCAGGACGTGGAGGCATCAT
TACAGGAGATAGGCAACTTATAGAATATATCAGATATTCATCTCTGCCTTCTATTTTTAGTTCTGCTTTAATGCCTCATG
ATTTAGCAGGATTTAGCGCATCATTAGAAATTATTACTCAAGAAGAATGGAGAAGAGCAAAATTACAAACCAATGCTGAT
TTTTTACGAGAAGCCTTATCATGTGAAGGAATTAATATAGGAAGTAGTGGCTCTCAAATAGTCCCTTTAGTTACAGGCAG
CGAGGCTAACACGCTTTGGTTAAGGGATGAGTTAGAAAAAGAAGACCTCTTTGGAGCCGTGTTCTGTTCACCCGCCACTC
CCAAAAATAAATGCCTGATTCGTTTATCCATCAGTGCGAATCACGAAAAATCGGACTTGCTCAGAGTGATTGAGTGCCTA
GCCAAACTTGCAAGAAAAAGACCCGATATTCCTTTGTTTAAGGGTAATTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(63-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

45.43

89.423

0.406