Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | FI878_RS11215 | Genome accession | NZ_CP041148 |
| Coordinates | 2291503..2291883 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain CUVET-MIC596 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2286503..2296883
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FI878_RS11185 (FI878_11340) | tadA | 2286621..2287124 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| FI878_RS11190 (FI878_11345) | - | 2287131..2288255 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| FI878_RS11195 (FI878_11350) | ung | 2288252..2288965 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| FI878_RS11200 (FI878_11355) | - | 2289016..2289612 (-) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| FI878_RS11205 (FI878_11360) | gspK | 2289843..2290802 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| FI878_RS11210 (FI878_11365) | xcpW | 2290802..2291503 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| FI878_RS11215 (FI878_11370) | xcpV | 2291503..2291883 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| FI878_RS11220 (FI878_11375) | - | 2291873..2292427 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| FI878_RS11225 (FI878_11380) | - | 2292437..2293045 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| FI878_RS11230 (FI878_11385) | - | 2293083..2293856 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| FI878_RS11235 (FI878_11390) | - | 2293874..2294215 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| FI878_RS11240 (FI878_11395) | - | 2294227..2295207 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| FI878_RS11245 (FI878_11400) | kdsB | 2295219..2295980 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=369891 FI878_RS11215 WP_000836911.1 2291503..2291883(-) (xcpV) [Acinetobacter baumannii strain CUVET-MIC596]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=369891 FI878_RS11215 WP_000836911.1 2291503..2291883(-) (xcpV) [Acinetobacter baumannii strain CUVET-MIC596]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |