Detailed information NTG0368175

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZS09_RS05165
• Genome accession: NZ_CP048359
• Coordinates: 1075070..1076062 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 53
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1070070..1081062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZS09_RS05135 (GZS09_05135)	ispD	1070131..1070841 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GZS09_RS05140 (GZS09_05140)	ispF	1070841..1071320 (+)	480	WP_001219251.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZS09_RS05145 (GZS09_05145)	truD	1071317..1072366 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GZS09_RS05150 (GZS09_05150)	surE	1072347..1073108 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GZS09_RS05155 (GZS09_05155)	pcm	1073102..1073728 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GZS09_RS05160 (GZS09_05160)	nlpD	1073913..1075007 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GZS09_RS05165 (GZS09_05165)	rpoS	1075070..1076062 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GZS09_RS05170 (GZS09_05170)	-	1076183..1076590 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
GZS09_RS05175 (GZS09_05175)	-	1076737..1077330 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GZS09_RS05180 (GZS09_05180)	-	1077330..1078757 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GZS09_RS05185 (GZS09_05185)	-	1078768..1079004 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GZS09_RS05190 (GZS09_05190)	ygbN	1079043..1080407 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=368175 GZS09_RS05165 WP_000081550.1 1075070..1076062(+) (rpoS) [Escherichia coli strain 53]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=368175 GZS09_RS05165 WP_000081550.1 1075070..1076062(+) (rpoS) [Escherichia coli strain 53]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715