Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SAA6159_RS04520 Genome accession   NC_017338
Coordinates   957809..959617 (+) Length   602 a.a.
NCBI ID   WP_000082737.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus JKD6159     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 952809..964617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6159_RS04500 (SAA6159_00853) trpS 953886..954875 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  SAA6159_RS04505 (SAA6159_00854) spxA 955169..955564 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SAA6159_RS04510 (SAA6159_00855) mecA 955935..956654 (+) 720 WP_001217732.1 adaptor protein MecA -
  SAA6159_RS04515 (SAA6159_00856) coiA 956775..957761 (+) 987 WP_000959290.1 competence protein CoiA Machinery gene
  SAA6159_RS04520 (SAA6159_00857) pepF 957809..959617 (+) 1809 WP_000082737.1 oligoendopeptidase F Regulator
  SAA6159_RS04525 (SAA6159_00858) yjbH 960077..960883 (-) 807 WP_000896698.1 protease adaptor protein YjbH -
  SAA6159_RS04530 (SAA6159_00859) - 960906..961271 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SAA6159_RS04535 (SAA6159_00860) - 961375..961968 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  SAA6159_RS04540 (SAA6159_00861) - 962154..962501 (+) 348 WP_001242107.1 hypothetical protein -
  SAA6159_RS04545 (SAA6159_00862) - 962518..963153 (+) 636 WP_001077683.1 GTP pyrophosphokinase family protein -
  SAA6159_RS04550 (SAA6159_00863) - 963170..963979 (+) 810 WP_001270833.1 NAD kinase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69838.39 Da        Isoelectric Point: 4.9226

>NTDB_id=36817 SAA6159_RS04520 WP_000082737.1 957809..959617(+) (pepF) [Staphylococcus aureus subsp. aureus JKD6159]
MSQQLTREEQERKYPEYTWDLTTIFKDDEAFEAAFKEVESELGKEEQFKGHIGDSAETLYNALELEDTLGTKLEKVYVYA
HLKQDQDTTNDKYTGMESRAHQLIIKFSSAWSFLVPEILQIDEDKIQSFVNSYDKLQKFAFDLKLINEKRPHILDAETEK
LLTEAQDALSTPSNVYGMFSNADLVFEDAIDKDGNAHPLTQGTFIKYLESDDRKLRESAYRNVYKAYGAHNNTLGATLAG
EVKKNVFNARTHNYKTAREKALSNNHIPENVYDNLVKTVHKYLPLLHRYTELRKELLGLDDLKMYDLYTPLIKDIKFEMP
YEEAKEWMLKALEPMGEEYLNVVKEGLNNRWVDVYENKGKRSGGYSSGAHLTNPFILLNWSNTISDLYTLVHEFGHSAHS
YFSRKFQPSNSSDYTIFVAEVASTCNEALLSDYMDKHLDDEKRLLLLNQELERFRATLFRQTMFAEFEHKIHTIEEAGEP
LTPTRMNEEYAKLNKLYFGDSVETDEDISKEWSRIPHFYMNYYVYQYATGYSAAQSLSHQILTEGKPAVDRYINEFLKKG
SSNYPIEILKNAGVDMTTPEPIEQACEVFEQKLNAFEKLMKA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=36817 SAA6159_RS04520 WP_000082737.1 957809..959617(+) (pepF) [Staphylococcus aureus subsp. aureus JKD6159]
ATGAGTCAACAATTAACGAGAGAAGAACAGGAACGTAAATATCCTGAATATACATGGGACTTAACTACAATCTTTAAAGA
TGACGAAGCATTTGAAGCTGCATTTAAAGAAGTTGAAAGTGAGTTAGGTAAAGAAGAACAATTTAAAGGACACATTGGTG
ATAGTGCTGAGACATTATACAATGCGTTAGAATTAGAAGATACATTAGGTACTAAATTAGAAAAAGTATATGTATACGCG
CACCTAAAACAAGACCAAGATACAACGAACGACAAGTATACTGGTATGGAGTCAAGAGCACATCAATTAATTATTAAATT
TAGCTCGGCATGGAGTTTCTTAGTGCCAGAGATTTTACAAATTGATGAAGATAAAATTCAATCATTTGTAAATTCATATG
ATAAATTACAAAAATTCGCATTTGATTTGAAGTTGATTAATGAAAAACGTCCTCATATTTTAGATGCTGAAACTGAAAAG
TTATTAACAGAAGCGCAGGACGCGTTATCAACGCCATCAAATGTATACGGTATGTTTAGCAACGCTGATTTAGTATTTGA
AGATGCGATTGATAAAGATGGAAATGCACACCCGTTAACACAAGGTACATTTATTAAGTATTTAGAATCAGATGATCGCA
AACTAAGAGAGAGTGCTTATAGAAATGTATATAAAGCATATGGAGCTCATAATAATACGCTTGGCGCTACGCTAGCAGGT
GAAGTGAAGAAAAATGTATTTAATGCTCGTACACACAATTACAAAACTGCAAGAGAAAAAGCATTGAGTAATAATCATAT
TCCAGAAAATGTATATGACAATCTAGTAAAAACTGTACATAAATATTTACCATTGCTACATAGATATACTGAATTGCGCA
AAGAATTGCTAGGTTTAGATGACTTGAAAATGTATGATTTATATACACCATTAATTAAAGATATTAAGTTTGAAATGCCT
TATGAAGAAGCTAAAGAGTGGATGTTAAAAGCTTTAGAACCAATGGGTGAAGAATATTTAAATGTAGTTAAAGAAGGCTT
AAACAATCGTTGGGTCGATGTCTATGAGAATAAAGGTAAACGTTCAGGTGGCTATTCATCAGGTGCACATTTAACTAATC
CATTTATTCTACTTAACTGGTCTAATACTATTTCAGACTTATACACATTAGTTCATGAATTTGGACATTCAGCACATAGT
TACTTCAGTAGAAAATTCCAACCGTCAAATTCTAGTGACTACACTATTTTTGTCGCTGAAGTTGCATCAACTTGTAACGA
AGCACTTTTAAGTGATTATATGGATAAACATCTTGATGATGAAAAACGCTTATTATTATTAAACCAAGAATTAGAACGTT
TCAGAGCTACATTATTCCGACAAACAATGTTCGCAGAATTTGAGCATAAAATTCATACCATTGAAGAAGCAGGTGAACCA
TTAACGCCAACTAGAATGAATGAAGAATATGCCAAATTAAATAAATTATACTTCGGTGATTCTGTAGAAACTGATGAAGA
TATTAGTAAGGAATGGTCACGTATTCCACACTTCTATATGAATTATTATGTATATCAATACGCAACTGGTTACAGTGCAG
CTCAAAGCTTAAGTCATCAAATTTTAACAGAAGGTAAGCCAGCAGTAGATAGATATATTAATGAATTCTTGAAAAAAGGT
AGCTCAAATTATCCAATTGAGATATTAAAAAATGCTGGTGTAGATATGACAACACCTGAACCAATTGAACAAGCTTGTGA
AGTTTTTGAACAAAAATTGAACGCTTTTGAAAAATTAATGAAAGCTTAG

Domains

Predicted by InterProScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

44.123

97.508

0.43

Multiple sequence alignment