Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJSA_RS05330 Genome accession   NC_017279
Coordinates   1008481..1009032 (+) Length   183 a.a.
NCBI ID   WP_002865738.1    Uniprot ID   O69302
Organism   Campylobacter jejuni subsp. jejuni IA3902     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1003481..1014032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJSA_RS05295 (CJSA_1006) - 1003671..1004096 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  CJSA_RS05300 (CJSA_1007) - 1004160..1004780 (+) 621 WP_002858394.1 NAD(P)H-dependent oxidoreductase -
  CJSA_RS05305 (CJSA_1008) - 1004780..1005385 (+) 606 WP_002853752.1 NAD(P)H-dependent oxidoreductase -
  CJSA_RS05310 (CJSA_1009) pgsA 1005510..1006046 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CJSA_RS05315 (CJSA_1010) rseP 1006043..1007149 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  CJSA_RS05320 (CJSA_1011) - 1007142..1008008 (+) 867 WP_002868637.1 VirK family antimicrobial peptide resistance protein -
  CJSA_RS05325 (CJSA_1012) rpsF 1008095..1008472 (+) 378 WP_002865739.1 30S ribosomal protein S6 -
  CJSA_RS05330 (CJSA_1013) ssb 1008481..1009032 (+) 552 WP_002865738.1 single-stranded DNA-binding protein Machinery gene
  CJSA_RS05335 (CJSA_1014) rpsR 1009043..1009303 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  CJSA_RS05340 (CJSA_1015) lon 1009364..1011739 (-) 2376 WP_002868636.1 endopeptidase La -
  CJSA_RS05345 (CJSA_1016) - 1011756..1012403 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  CJSA_RS05350 (CJSA_1017) fliW 1012564..1012953 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  CJSA_RS05355 (CJSA_1018) proC 1012953..1013684 (+) 732 WP_002868635.1 pyrroline-5-carboxylate reductase Machinery gene
  CJSA_RS05360 (CJSA_1019) ctsT 1013681..1013983 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=36401 CJSA_RS05330 WP_002865738.1 1008481..1009032(+) (ssb) [Campylobacter jejuni subsp. jejuni IA3902]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=36401 CJSA_RS05330 WP_002865738.1 1008481..1009032(+) (ssb) [Campylobacter jejuni subsp. jejuni IA3902]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment