NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	E3T10_RS01725	Genome accession	NZ_CP047811
Coordinates	320683..321369 (+)	Length	228 a.a.
NCBI ID	WP_000692885.1	Uniprot ID	-
Organism	Staphylococcus aureus strain UP_1522
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 315683..326369

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3T10_RS01710 (E3T10_01710)	-	315797..318427 (+)	2631	WP_000425356.1	valine--tRNA ligase	-
E3T10_RS01715 (E3T10_01715)	-	318440..319711 (+)	1272	WP_001108332.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
E3T10_RS01720 (E3T10_01720)	-	319979..320686 (+)	708	WP_000261124.1	prepilin peptidase	-
E3T10_RS01725 (E3T10_01725)	ysxA/radC	320683..321369 (+)	687	WP_000692885.1	RadC family protein	Machinery gene
E3T10_RS01730 (E3T10_01730)	-	321437..321721 (+)	285	WP_000171863.1	hypothetical protein	-
E3T10_RS01735 (E3T10_01735)	-	321836..322033 (-)	198	WP_000025835.1	hypothetical protein	-
E3T10_RS01740 (E3T10_01740)	-	322193..322666 (+)	474	WP_031928193.1	DUF4930 family protein	-
E3T10_RS01745 (E3T10_01745)	-	322740..322859 (+)	120	WP_000840600.1	hypothetical protein	-
E3T10_RS01750 (E3T10_01750)	mreC	323058..323900 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
E3T10_RS01755 (E3T10_01755)	mreD	323900..324430 (+)	531	WP_001259927.1	rod shape-determining protein MreD	-
E3T10_RS01760 (E3T10_01760)	rplU	324666..324974 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
E3T10_RS01765 (E3T10_01765)	-	324980..325300 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
E3T10_RS01770 (E3T10_01770)	rpmA	325312..325596 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25293.20 Da Isoelectric Point: 6.7572

                                >NTDB_id=363780 E3T10_RS01725 WP_000692885.1 320683..321369(+) (ysxA/radC) [Staphylococcus aureus strain UP_1522]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTIRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=363780 E3T10_RS01725 WP_000692885.1 320683..321369(+) (ysxA/radC) [Staphylococcus aureus strain UP_1522]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCAGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCATCACAAGAAGATAT

CATAACAACAATAAGATTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0363780