Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EUC40_RS18225 Genome accession   NZ_CP040336
Coordinates   3602232..3602834 (+) Length   200 a.a.
NCBI ID   WP_000155592.1    Uniprot ID   A0A0G8BSW4
Organism   Bacillus luti strain FJ     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3597232..3607834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS18180 gpsB 3597475..3597810 (-) 336 WP_000622432.1 cell division regulator GpsB -
  EUC40_RS18185 - 3597908..3598462 (-) 555 WP_071709747.1 DUF1273 domain-containing protein -
  EUC40_RS18190 - 3598520..3598957 (-) 438 WP_156576220.1 CotD family spore coat protein -
  EUC40_RS18195 - 3599113..3599637 (-) 525 WP_156576221.1 YppG family protein -
  EUC40_RS18200 - 3599815..3600006 (+) 192 WP_000242655.1 YppF family protein -
  EUC40_RS18205 - 3600033..3600377 (-) 345 WP_071709751.1 YppE family protein -
  EUC40_RS18210 - 3600393..3600635 (-) 243 WP_001252037.1 hypothetical protein -
  EUC40_RS18215 - 3600721..3600897 (+) 177 WP_079999533.1 phage portal protein -
  EUC40_RS18220 - 3601103..3602128 (-) 1026 WP_156576222.1 DUF2515 domain-containing protein -
  EUC40_RS18225 recU 3602232..3602834 (+) 603 WP_000155592.1 Holliday junction resolvase RecU Machinery gene
  EUC40_RS27315 - 3603075..3604744 (+) 1670 Protein_3659 PBP1A family penicillin-binding protein -
  EUC40_RS27320 - 3604817..3605587 (+) 771 WP_244322207.1 fibronectin type III domain-containing protein -
  EUC40_RS18235 - 3605613..3606131 (-) 519 WP_156576223.1 YpoC family protein -
  EUC40_RS18240 nth 3606135..3606782 (-) 648 WP_071709754.1 endonuclease III -
  EUC40_RS18245 dnaD 3606798..3607505 (-) 708 WP_000728544.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.61 Da        Isoelectric Point: 9.4277

>NTDB_id=363356 EUC40_RS18225 WP_000155592.1 3602232..3602834(+) (recU) [Bacillus luti strain FJ]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=363356 EUC40_RS18225 WP_000155592.1 3602232..3602834(+) (recU) [Bacillus luti strain FJ]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAACTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCGACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTACTCGATGCTAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCAATTACGAAAGAAGAAATAGAAGAGCATGGCTCTTTATTGTCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8BSW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment