Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   E3S75_RS09730 Genome accession   NZ_CP047798
Coordinates   1965378..1965755 (-) Length   125 a.a.
NCBI ID   WP_236658625.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1960378..1970755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S75_RS09705 (E3S75_09705) - 1960759..1961736 (+) 978 WP_160195193.1 tRNA dihydrouridine synthase -
  E3S75_RS09710 (E3S75_09710) - 1961805..1962377 (-) 573 WP_000540837.1 TetR/AcrR family transcriptional regulator -
  E3S75_RS09715 (E3S75_09715) - 1962525..1964042 (+) 1518 WP_000107171.1 MDR family MFS transporter -
  E3S75_RS09720 (E3S75_09720) - 1964044..1964601 (+) 558 WP_000633423.1 DUF4811 domain-containing protein -
  E3S75_RS09725 (E3S75_09725) - 1964843..1965316 (-) 474 WP_000455984.1 GNAT family N-acetyltransferase -
  E3S75_RS09730 (E3S75_09730) lrpC 1965378..1965755 (-) 378 WP_236658625.1 Lrp/AsnC family transcriptional regulator Machinery gene
  E3S75_RS09735 (E3S75_09735) - 1965875..1966822 (+) 948 Protein_1892 IS30 family transposase -
  E3S75_RS13730 (E3S75_09740) - 1966814..1967089 (-) 276 WP_072468794.1 site-specific DNA-methyltransferase -
  E3S75_RS09745 (E3S75_09745) - 1967728..1969647 (-) 1920 WP_000632676.1 DNA/RNA helicase domain-containing protein -
  E3S75_RS09750 (E3S75_09750) - 1970122..1970316 (+) 195 WP_000953270.1 hypothetical protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14576.70 Da        Isoelectric Point: 4.7711

>NTDB_id=362947 E3S75_RS09730 WP_236658625.1 1965378..1965755(-) (lrpC) [Staphylococcus aureus strain UP_378]
MLNNSRITINELSKQVNLSAPAVRERVNKLEDQGIIKGYTISIDYKELGYDVEILIELTIKNNRYKDFKEFISKQDNVEF
CYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQIKCQFIFSSVV

Nucleotide


Download         Length: 378 bp        

>NTDB_id=362947 E3S75_RS09730 WP_236658625.1 1965378..1965755(-) (lrpC) [Staphylococcus aureus strain UP_378]
TTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGTAAACAAGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGT
AAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTAGCATAGATTATAAGGAATTAGGTTACGATGTAGAAA
TATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTTAAAGAATTTATTTCAAAACAAGATAATGTTGAGTTT
TGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCGGTTGGAAAATATGGATGAAGTAGAAACATTTGTTGA
TACCATACAGCCATATGGGCAGATAAAATGTCAGTTTATCTTTTCATCAGTTGTCTAA

Domains

Predicted by InterProScan.

Winged helix-turn-helix DNA-binding (HTH_24)

(3-37)

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(56-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

42.975

96.8

0.416