Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   FDN00_RS02960 Genome accession   NZ_CP040084
Coordinates   622418..622744 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain VB33071     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 617418..627744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDN00_RS02935 (FDN00_02935) hemC 618036..618953 (+) 918 WP_031944971.1 hydroxymethylbilane synthase -
  FDN00_RS02940 (FDN00_02940) - 618958..619724 (+) 767 Protein_565 uroporphyrinogen-III synthase -
  FDN00_RS02945 (FDN00_02945) - 619733..620572 (+) 840 WP_001230204.1 hypothetical protein -
  FDN00_RS02950 (FDN00_02950) - 620582..621775 (+) 1194 WP_000681783.1 hypothetical protein -
  FDN00_RS02955 (FDN00_02955) - 621783..622223 (+) 441 WP_000661570.1 acyl-CoA thioesterase -
  FDN00_RS02960 (FDN00_02960) hns 622418..622744 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  FDN00_RS02965 (FDN00_02965) gspN 623077..623820 (+) 744 WP_000730343.1 type II secretion system protein N -
  FDN00_RS02970 (FDN00_02970) - 623820..624656 (+) 837 WP_000870033.1 type II secretion system protein N -
  FDN00_RS02975 (FDN00_02975) gspD 624698..626974 (+) 2277 WP_001196426.1 type II secretion system secretin GspD -
  FDN00_RS02980 (FDN00_02980) - 627015..627644 (+) 630 WP_000219967.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=361946 FDN00_RS02960 WP_000801427.1 622418..622744(+) (hns) [Acinetobacter baumannii strain VB33071]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=361946 FDN00_RS02960 WP_000801427.1 622418..622744(+) (hns) [Acinetobacter baumannii strain VB33071]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment