Detailed information NTG0361107

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: E3T13_RS02140
• Genome accession: NZ_CP047778
• Coordinates: 392359..393045 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692881.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain UP_1572
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 387359..398045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3T13_RS02125 (E3T13_02125)	-	387480..390110 (+)	2631	WP_000425358.1	valine--tRNA ligase	-
E3T13_RS02130 (E3T13_02130)	-	390123..391394 (+)	1272	WP_001108339.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
E3T13_RS02135 (E3T13_02135)	-	391655..392362 (+)	708	WP_000261106.1	prepilin peptidase	-
E3T13_RS02140 (E3T13_02140)	ysxA/radC	392359..393045 (+)	687	WP_000692881.1	RadC family protein	Machinery gene
E3T13_RS02145 (E3T13_02145)	-	393113..393397 (+)	285	WP_000171861.1	hypothetical protein	-
E3T13_RS02150 (E3T13_02150)	-	393513..393710 (-)	198	WP_000025835.1	hypothetical protein	-
E3T13_RS02155 (E3T13_02155)	-	393870..394343 (+)	474	WP_001236733.1	DUF4930 family protein	-
E3T13_RS02160 (E3T13_02160)	-	394417..394536 (+)	120	WP_000840603.1	hypothetical protein	-
E3T13_RS02165 (E3T13_02165)	mreC	394736..395578 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
E3T13_RS02170 (E3T13_02170)	mreD	395578..396108 (+)	531	WP_001259929.1	rod shape-determining protein MreD	-
E3T13_RS02175 (E3T13_02175)	rplU	396401..396709 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
E3T13_RS02180 (E3T13_02180)	-	396715..397035 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
E3T13_RS02185 (E3T13_02185)	rpmA	397047..397331 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25345.25 Da
• Isoelectric Point: 6.7572

>NTDB_id=361107 E3T13_RS02140 WP_000692881.1 392359..393045(+) (ysxA/radC) [Staphylococcus aureus strain UP_1572]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREFFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=361107 E3T13_RS02140 WP_000692881.1 392359..393045(+) (ysxA/radC) [Staphylococcus aureus strain UP_1572]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAATTTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
AATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus gordonii str. Challis substr. CH1	39.45	95.614	0.377
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373