Detailed information NTG0360557

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: GQ601_RS12365
• Genome accession: NZ_CP047646
• Coordinates: 2568108..2568794 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain 19/Msa0875
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2563108..2573794

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQ601_RS12350 (GQ601_12410)	-	2563228..2565858 (+)	2631	WP_000425349.1	valine--tRNA ligase	-
GQ601_RS12355 (GQ601_12415)	-	2565871..2567142 (+)	1272	WP_001108343.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
GQ601_RS12360 (GQ601_12420)	-	2567404..2568111 (+)	708	WP_000261102.1	A24 family peptidase	-
GQ601_RS12365 (GQ601_12425)	ysxA/radC	2568108..2568794 (+)	687	WP_000692886.1	DNA repair protein RadC	Machinery gene
GQ601_RS12370 (GQ601_12430)	-	2568862..2569146 (+)	285	WP_000171859.1	hypothetical protein	-
GQ601_RS12375 (GQ601_12435)	-	2569263..2569460 (-)	198	WP_000025835.1	hypothetical protein	-
GQ601_RS12380 (GQ601_12440)	-	2569620..2570093 (+)	474	WP_001236734.1	DUF4930 family protein	-
GQ601_RS12385 (GQ601_12445)	-	2570167..2570286 (+)	120	WP_000840603.1	hypothetical protein	-
GQ601_RS12390 (GQ601_12450)	mreC	2570484..2571326 (+)	843	WP_000911033.1	rod shape-determining protein MreC	-
GQ601_RS12395 (GQ601_12455)	mreD	2571326..2571856 (+)	531	WP_001259929.1	rod shape-determining protein MreD	-
GQ601_RS12400 (GQ601_12460)	rplU	2572343..2572651 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
GQ601_RS12405 (GQ601_12465)	-	2572657..2572977 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
GQ601_RS12410 (GQ601_12470)	rpmA	2572989..2573273 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=360557 GQ601_RS12365 WP_000692886.1 2568108..2568794(+) (ysxA/radC) [Staphylococcus aureus strain 19/Msa0875]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=360557 GQ601_RS12365 WP_000692886.1 2568108..2568794(+) (ysxA/radC) [Staphylococcus aureus strain 19/Msa0875]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377