Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   GTW28_RS02410 Genome accession   NZ_CP047485
Coordinates   467113..467547 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain BJQ0005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462113..472547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS02380 (GTW28_02380) ydaD 462760..463620 (+) 861 WP_038428370.1 SDR family oxidoreductase -
  GTW28_RS02385 (GTW28_02385) lyxE 463636..464139 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  GTW28_RS02390 (GTW28_02390) ydaF 464227..464778 (+) 552 WP_046380787.1 GNAT family protein -
  GTW28_RS02395 (GTW28_02395) ydaG 464856..465278 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  GTW28_RS02400 (GTW28_02400) amj 465784..466593 (+) 810 WP_032722918.1 lipid II flippase Amj -
  GTW28_RS02405 (GTW28_02405) ydzA 466638..466928 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  GTW28_RS02410 (GTW28_02410) lrpC 467113..467547 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  GTW28_RS02415 (GTW28_02415) topB 467612..469795 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  GTW28_RS02420 (GTW28_02420) ephJ 469997..471085 (+) 1089 WP_003246551.1 lipoprotein -
  GTW28_RS02425 (GTW28_02425) epsK 471066..471917 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=359835 GTW28_RS02410 WP_003246585.1 467113..467547(+) (lrpC) [Bacillus subtilis strain BJQ0005]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=359835 GTW28_RS02410 WP_003246585.1 467113..467547(+) (lrpC) [Bacillus subtilis strain BJQ0005]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1