Detailed information
Bioinformatically predicted
Overview
| Name | pilL-C | Type | Machinery gene |
| Locus tag | GTH07_RS07305 | Genome accession | NZ_CP047305 |
| Coordinates | 1605370..1605750 (+) | Length | 126 a.a. |
| NCBI ID | WP_000045526.1 | Uniprot ID | Q6BBL2 |
| Organism | Vibrio cholerae O37 strain ATCC 25872 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1600370..1610750
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTH07_RS07280 (GTH07_07280) | - | 1600962..1601618 (+) | 657 | WP_000974697.1 | HEAT repeat domain-containing protein | - |
| GTH07_RS07285 (GTH07_07285) | - | 1601629..1602474 (+) | 846 | WP_001002907.1 | protein-glutamate O-methyltransferase CheR | - |
| GTH07_RS07290 (GTH07_07290) | - | 1602474..1602845 (+) | 372 | WP_000757478.1 | response regulator | - |
| GTH07_RS07295 (GTH07_07295) | - | 1602854..1605127 (+) | 2274 | WP_001178898.1 | chemotaxis protein CheA | - |
| GTH07_RS07300 (GTH07_07300) | - | 1605117..1605377 (+) | 261 | WP_001143862.1 | hypothetical protein | - |
| GTH07_RS07305 (GTH07_07305) | pilL-C | 1605370..1605750 (+) | 381 | WP_000045526.1 | response regulator | Machinery gene |
| GTH07_RS07310 (GTH07_07310) | - | 1605758..1606993 (+) | 1236 | WP_000621946.1 | methyl-accepting chemotaxis protein | - |
| GTH07_RS07315 (GTH07_07315) | - | 1607048..1607362 (-) | 315 | WP_000312387.1 | multidrug efflux SMR transporter | - |
| GTH07_RS07320 (GTH07_07320) | - | 1607508..1609022 (-) | 1515 | WP_000411507.1 | deoxyribodipyrimidine photo-lyase | - |
| GTH07_RS07325 (GTH07_07325) | - | 1609178..1610584 (-) | 1407 | WP_000545341.1 | MDR family MFS transporter | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13674.04 Da Isoelectric Point: 9.8959
>NTDB_id=359053 GTH07_RS07305 WP_000045526.1 1605370..1605750(+) (pilL-C) [Vibrio cholerae O37 strain ATCC 25872]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
Nucleotide
Download Length: 381 bp
>NTDB_id=359053 GTH07_RS07305 WP_000045526.1 1605370..1605750(+) (pilL-C) [Vibrio cholerae O37 strain ATCC 25872]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL-C | Synechocystis sp. PCC 6803 |
39.2 |
99.206 |
0.389 |