Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   GRI05_RS09700 Genome accession   NZ_CP047248
Coordinates   1960278..1960727 (-) Length   149 a.a.
NCBI ID   WP_012027921.1    Uniprot ID   G9CHX9
Organism   Streptococcus suis strain LSM178     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1955278..1965727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRI05_RS09680 (GRI05_09895) - 1955705..1956238 (-) 534 WP_012028546.1 histidine phosphatase family protein -
  GRI05_RS09685 (GRI05_09900) - 1956245..1956688 (-) 444 WP_002939955.1 dUTP diphosphatase -
  GRI05_RS09690 (GRI05_09905) - 1956794..1958578 (-) 1785 WP_012028547.1 ABC transporter ATP-binding protein -
  GRI05_RS09695 (GRI05_09910) - 1958579..1960285 (-) 1707 WP_012028548.1 ABC transporter ATP-binding protein -
  GRI05_RS09700 (GRI05_09915) rcrR 1960278..1960727 (-) 450 WP_012027921.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  GRI05_RS09705 (GRI05_09920) - 1960949..1961965 (+) 1017 WP_012027922.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GRI05_RS09710 (GRI05_09925) galU 1962010..1962909 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GRI05_RS09715 (GRI05_09930) - 1962927..1963604 (-) 678 WP_012027923.1 rhomboid family intramembrane serine protease -
  GRI05_RS09720 (GRI05_09935) - 1963588..1964130 (-) 543 WP_012027924.1 5-formyltetrahydrofolate cyclo-ligase -
  GRI05_RS09725 (GRI05_09940) - 1964171..1965298 (-) 1128 WP_012027925.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17284.90 Da        Isoelectric Point: 8.9142

>NTDB_id=358512 GRI05_RS09700 WP_012027921.1 1960278..1960727(-) (rcrR) [Streptococcus suis strain LSM178]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNGFIQ
VLPSKVDKRFKQLVLTEKGQGKICHLKAFHEEMHHSLFWGIQKEDFDLVKQVGNQLKVNIQRYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=358512 GRI05_RS09700 WP_012027921.1 1960278..1960727(-) (rcrR) [Streptococcus suis strain LSM178]
ATGGGACATACTATTGCAGATTTTCGGAACTTGCTCAATCAGATTGAACAAATTAGTGAAACCATTGCAAAAGAATACGA
TGTGGAGCACTTGGCTGGTCCACAGGGCTGGGCCTTGCGCTTCATTGCGGAACGGTCGGAAGCCGAAACCTTTGTAAAAG
ATATAGAAGCGGAATTAAAGATTTCCAAATCGGTTGCCAGCAATCTGGTCAAGAGAATGGAGAAAAATGGCTTTATCCAA
GTCCTTCCCTCTAAGGTTGACAAACGCTTCAAACAGCTGGTTTTGACAGAGAAGGGACAAGGGAAGATATGTCACCTGAA
AGCTTTTCATGAAGAAATGCACCATTCACTTTTTTGGGGCATTCAAAAAGAGGACTTTGACTTGGTTAAACAGGTGGGCA
ATCAATTAAAAGTAAATATTCAACGCTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9CHX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416

Multiple sequence alignment