Detailed information NTG0358392

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: GRT08_RS14730
• Genome accession: NZ_CP047234
• Coordinates: 2980541..2981668 (-)
• Length: 375 a.a.
• NCBI ID: WP_377802808.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain FJ4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2975541..2986668

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRT08_RS14710 (GRT08_14500)	-	2976043..2976888 (-)	846	WP_014418724.1	glucosaminidase domain-containing protein	-
GRT08_RS14715 (GRT08_14505)	hmpA	2977030..2978205 (-)	1176	WP_071392603.1	NO-inducible flavohemoprotein	-
GRT08_RS14720 (GRT08_14510)	-	2978423..2979064 (+)	642	WP_071392221.1	cupin domain-containing protein	-
GRT08_RS14725 (GRT08_14515)	-	2979132..2979452 (-)	321	WP_377802807.1	hypothetical protein	-
GRT08_RS14730 (GRT08_14520)	rapC	2980541..2981668 (-)	1128	WP_377802808.1	tetratricopeptide repeat protein	Regulator
GRT08_RS14735 (GRT08_14525)	-	2981989..2982192 (+)	204	WP_015387806.1	hypothetical protein	-
GRT08_RS14740 (GRT08_14530)	-	2982316..2982831 (+)	516	WP_071392223.1	hypothetical protein	-
GRT08_RS14750 (GRT08_14540)	-	2983208..2984038 (-)	831	WP_007613337.1	undecaprenyl-diphosphate phosphatase	-
GRT08_RS14755 (GRT08_14545)	-	2984130..2985290 (-)	1161	WP_014305691.1	AI-2E family transporter	-
GRT08_RS14760 (GRT08_14550)	-	2985470..2986456 (+)	987	WP_040238957.1	Gfo/Idh/MocA family protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44080.11 Da
• Isoelectric Point: 5.3668

>NTDB_id=358392 GRT08_RS14730 WP_377802808.1 2980541..2981668(-) (rapC) [Bacillus amyloliquefaciens strain FJ4]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYIDFKRYEKSQPHLEKALDLSKELDNKRLISSALYNLGTNFGDRGDYEKAEI
FLRQAVEITEKAKLSNLPHSLFSYAKFLFKQGKMAEGIQVSKKGLSAAVYQGDKLFENLQGYLKALYVDAVDQQGVNETI
EYLEKNKNYSYVEDIACETASVYADSREFENSYFYHKKMVDTQTQIQRGECQYEF

Nucleotide

• Length: 1128 bp

>NTDB_id=358392 GRT08_RS14730 WP_377802808.1 2980541..2981668(-) (rapC) [Bacillus amyloliquefaciens strain FJ4]
GTGAGTTCTGTTTTACCGTCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAGCAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTCATGCTGGATTATTTAGAACCGGTGACTACCCGTGTGAGACCGACAATTGACGAG
CTGCTGGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTACTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTTGTTATATCAGG
GAATTATATTGATTTTAAGCGTTATGAGAAGAGTCAGCCGCATCTTGAAAAGGCTCTTGATTTATCAAAAGAGTTAGATA
ACAAGAGGTTGATTAGTTCTGCTCTTTATAATTTGGGTACAAATTTCGGAGATAGGGGCGACTATGAAAAGGCTGAGATA
TTTTTAAGGCAAGCAGTAGAGATAACCGAAAAAGCAAAACTGAGCAACTTGCCGCACTCTTTATTTTCTTATGCAAAATT
CCTCTTTAAACAAGGGAAAATGGCTGAGGGTATCCAAGTAAGCAAAAAAGGTTTGTCGGCCGCGGTATACCAAGGCGATA
AGCTTTTCGAAAATCTACAGGGGTATCTGAAGGCTCTTTATGTGGATGCAGTGGATCAACAGGGAGTTAATGAAACAATT
GAGTATCTGGAGAAGAATAAGAATTACTCATATGTTGAAGATATTGCTTGCGAAACTGCATCTGTTTACGCAGATTCAAG
GGAGTTTGAGAATTCTTATTTTTATCATAAAAAAATGGTTGATACACAAACACAAATTCAAAGGGGAGAGTGCCAGTATG
AATTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (193-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	42.593	100	0.429
rapF	Bacillus subtilis subsp. subtilis str. 168	38.095	100	0.384