Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   PSL001_RS09310 Genome accession   NZ_CP039378
Coordinates   1833295..1834557 (-) Length   420 a.a.
NCBI ID   WP_060743697.1    Uniprot ID   A0A6L5A7Q5
Organism   Pediococcus pentosaceus strain SL001     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1828295..1839557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSL001_RS09305 (PSL001_09305) - 1831552..1833267 (-) 1716 WP_060743696.1 proline--tRNA ligase -
  PSL001_RS09310 (PSL001_09310) eeP 1833295..1834557 (-) 1263 WP_060743697.1 RIP metalloprotease RseP Regulator
  PSL001_RS09315 (PSL001_09315) - 1834581..1835366 (-) 786 WP_041527001.1 phosphatidate cytidylyltransferase -
  PSL001_RS09320 (PSL001_09320) - 1835377..1836126 (-) 750 WP_011673316.1 isoprenyl transferase -
  PSL001_RS09325 (PSL001_09325) frr 1836384..1836944 (-) 561 WP_060743698.1 ribosome recycling factor -
  PSL001_RS09330 (PSL001_09330) pyrH 1836944..1837669 (-) 726 WP_002833607.1 UMP kinase -
  PSL001_RS09335 (PSL001_09335) tsf 1837823..1838701 (-) 879 WP_060743699.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46411.02 Da        Isoelectric Point: 9.6829

>NTDB_id=358304 PSL001_RS09310 WP_060743697.1 1833295..1834557(-) (eeP) [Pediococcus pentosaceus strain SL001]
MITTIITFIVVFLILVVVHEYGHFVAAKKSGILVREFSIGMGPKIVDLKRNGTTYTLRILPIGGYVRMAGLDEQEDELKT
GQHVTLTTDNTGQVTIINTSSKVQNLMGIPVDVTSFDLQDKLFIEGYENGNEDEVKHFEIDHDASIVESDGTEVRIAPRD
VQFQSAKIWQRLITNFAGPFNNFVLAIVVFAIMGVMQGAVPANTNQVQVVENGVAQKAGIKNNDRIVRVEGQKTDNWSQL
SKAVSARPNQKTTLEVLRQKQIKKITLTPKLASNGSKKVGMIGVQSSMTTNLGKRVLYGFTGTWQMAKSLFTALGQMLHG
FSLNDLGGPVAIYATTSQATHQGFMSVLYVLGFLSLNLGIVNLLPIPALDGGKILLNFVEMIRRKPLKVETENVITLIGF
GFLMILMLLVTWNDIQRYFF

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=358304 PSL001_RS09310 WP_060743697.1 1833295..1834557(-) (eeP) [Pediococcus pentosaceus strain SL001]
ATGATAACTACGATTATTACCTTTATTGTTGTATTTTTAATTTTAGTTGTTGTCCATGAGTATGGGCATTTTGTTGCTGC
TAAAAAGTCCGGTATTTTAGTTCGTGAATTTTCAATTGGGATGGGTCCTAAAATTGTTGATTTGAAGCGTAATGGAACTA
CGTATACTTTACGGATTCTTCCCATTGGTGGTTATGTTCGAATGGCGGGACTCGATGAACAAGAAGATGAATTGAAAACG
GGACAACATGTTACATTAACCACGGATAATACTGGACAAGTGACGATTATTAATACTTCTAGTAAAGTTCAAAATTTGAT
GGGCATTCCAGTTGATGTAACCAGTTTTGACTTACAAGATAAATTATTCATTGAAGGTTATGAAAATGGTAACGAAGACG
AAGTTAAACATTTTGAAATTGATCATGATGCATCGATAGTCGAATCCGACGGGACAGAAGTTCGAATTGCACCGCGTGAT
GTTCAATTTCAATCTGCTAAGATTTGGCAGCGACTAATTACTAATTTTGCTGGACCATTTAATAATTTTGTTTTGGCCAT
CGTTGTTTTTGCGATAATGGGAGTTATGCAGGGAGCAGTTCCGGCTAATACTAACCAAGTACAAGTCGTTGAAAATGGTG
TTGCTCAAAAAGCAGGAATTAAAAATAATGATCGTATTGTTAGAGTTGAAGGACAAAAAACAGATAATTGGAGTCAATTA
TCTAAGGCAGTTTCAGCTCGTCCAAATCAAAAAACGACTTTAGAAGTATTACGTCAAAAGCAAATAAAGAAAATCACATT
AACACCTAAGTTAGCAAGTAATGGTAGTAAAAAAGTGGGTATGATTGGTGTTCAATCATCCATGACAACTAATTTAGGTA
AGCGAGTTTTATATGGTTTCACTGGAACTTGGCAAATGGCTAAGAGTTTGTTTACCGCTTTAGGACAGATGCTACATGGC
TTTAGTTTGAATGATTTAGGCGGTCCTGTTGCAATTTATGCCACGACCTCTCAAGCTACCCATCAAGGCTTCATGTCAGT
GCTGTATGTGCTAGGTTTTCTATCCCTAAACTTGGGGATTGTTAACTTATTACCAATTCCAGCTTTGGATGGAGGTAAAA
TTCTCCTAAATTTCGTTGAAATGATTCGAAGAAAACCTTTAAAAGTTGAAACCGAAAATGTGATTACGCTAATTGGCTTC
GGATTTTTAATGATATTAATGCTGTTAGTTACTTGGAATGATATTCAAAGATACTTTTTTTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(7-406)

PDZ domain (PDZ_6)

(208-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5A7Q5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

48

100

0.486
  eeP Streptococcus thermophilus LMG 18311

48

100

0.486

Multiple sequence alignment