Detailed information NTG0357677

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: E5790_RS14430
• Genome accession: NZ_CP039255
• Coordinates: 3097745..3099118 (-)
• Length: 457 a.a.
• NCBI ID: WP_049405671.1
• Uniprot ID: A0AA40YGR3
• Organism: Stenotrophomonas sp. PAMC25021
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3092745..3104118

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5790_RS14415 (E5790_14415)	pilA/pilAI	3094274..3094702 (+)	429	WP_049416952.1	pilin	Machinery gene
E5790_RS14420 (E5790_14420)	-	3094906..3095739 (+)	834	WP_168708240.1	sterol desaturase family protein	-
E5790_RS14425 (E5790_14425)	pilB	3095900..3097630 (+)	1731	WP_111206599.1	type IV-A pilus assembly ATPase PilB	Machinery gene
E5790_RS14430 (E5790_14430)	pilR	3097745..3099118 (-)	1374	WP_049405671.1	sigma-54 dependent transcriptional regulator	Regulator
E5790_RS14435 (E5790_14435)	-	3099179..3100792 (-)	1614	WP_049440369.1	ATP-binding protein	-
E5790_RS14440 (E5790_14440)	sucC	3101198..3102367 (+)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
E5790_RS14445 (E5790_14445)	sucD	3102388..3103263 (+)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49611.88 Da
• Isoelectric Point: 6.4421

>NTDB_id=357677 E5790_RS14430 WP_049405671.1 3097745..3099118(-) (pilR) [Stenotrophomonas sp. PAMC25021]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNTERPAPGPAAEQGARLLGDSPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAAAEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPE
LAASVLARLARSHGRPTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTPGSAAHAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=357677 E5790_RS14430 WP_049405671.1 3097745..3099118(-) (pilR) [Stenotrophomonas sp. PAMC25021]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACGCTCGGCCGCAT
GGGGCTGCGCATCAGTACGGCAGCCAACCTTGCCGAAGCGCGCGAACTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGACGGCAACGGCATCGAGCTGGTCAGTGAGATCGCCCAGCACTACCCACGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTCAACAACACCGAGCGCCCCGCGCCCGGCCCCGCCG
CCGAACAGGGCGCACGCCTGCTTGGTGATTCGCCGGCCATGGACGTGCTGCGTACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGCCCAGGGCGCCCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAAAGCGAATTCTTCGGCCACCGCA
AAGGCAGCTTCAGCGGCGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTCGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCGCGGTGGGCGCGGC
TGCCGAGGAGCCGGTTGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTCTACTACCGCATCAACGTGATCGAACTGAGGGTCCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGAA
CTGGCCGCATCGGTACTGGCACGGCTGGCCCGCAGCCATGGCCGCCCGACGCCGTTGCTGGCGCCGTCGGCGCTGGACGC
ACTGGCCCAGTACGCCTTCCCTGGCAACGTGCGCGAATTGGAGAACATCCTGGAACGCGCGCTGGCCCTGGCCGAAGAAG
ACCGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCCCCGCGCACGCCCGGCAGCGCAGCACACGCCGAGGCCGTG
GTGGACCTGCAGCCCGGCAGCGCCGCCCTGCCCTCGTACATCGAACAGCTCGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAAAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.939	99.781	0.628
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49