Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   E1949_RS04485 Genome accession   NZ_CP039160
Coordinates   893157..894143 (+) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Lr6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 888157..899143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1949_RS04460 (E1949_04540) opp4B 888370..889332 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  E1949_RS04465 (E1949_04545) opp4C 889344..890225 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  E1949_RS04470 (E1949_04550) trpS 890267..891256 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  E1949_RS04475 (E1949_04555) spxA 891551..891946 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  E1949_RS04480 (E1949_04560) mecA 892317..893036 (+) 720 WP_001217728.1 adaptor protein MecA -
  E1949_RS04485 (E1949_04565) coiA 893157..894143 (+) 987 WP_000959292.1 competence protein CoiA Machinery gene
  E1949_RS04490 (E1949_04570) pepF 894191..895999 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  E1949_RS04495 (E1949_04575) yjbH 896459..897265 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  E1949_RS04500 (E1949_04580) - 897288..897653 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  E1949_RS04505 (E1949_04585) - 897757..898350 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  E1949_RS04510 (E1949_04590) - 898536..898883 (+) 348 WP_001242103.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=357285 E1949_RS04485 WP_000959292.1 893157..894143(+) (coiA) [Staphylococcus aureus strain Lr6]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=357285 E1949_RS04485 WP_000959292.1 893157..894143(+) (coiA) [Staphylococcus aureus strain Lr6]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment