Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E5491_RS08370 Genome accession   NZ_CP039156
Coordinates   1658030..1658476 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WCUH29     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1653030..1663476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5491_RS08340 (E5491_08395) gcvPA 1653956..1655302 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  E5491_RS08345 (E5491_08400) gcvT 1655322..1656413 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  E5491_RS08350 (E5491_08405) - 1656572..1657096 (-) 525 WP_001015120.1 shikimate kinase -
  E5491_RS08355 (E5491_08410) - 1657086..1657232 (-) 147 WP_001792109.1 hypothetical protein -
  E5491_RS08360 (E5491_08415) comGF 1657329..1657826 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  E5491_RS08365 (E5491_08420) comGE 1657744..1658043 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  E5491_RS08370 (E5491_08425) comGD 1658030..1658476 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  E5491_RS08375 (E5491_08430) comGC 1658454..1658765 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E5491_RS08380 (E5491_08435) comGB 1658779..1659849 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  E5491_RS08385 (E5491_08440) comGA 1659821..1660795 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  E5491_RS08390 (E5491_08445) - 1660847..1661470 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E5491_RS08395 (E5491_08450) - 1661467..1661796 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E5491_RS08400 (E5491_08455) - 1661796..1662782 (-) 987 WP_000161314.1 ROK family glucokinase -
  E5491_RS08405 (E5491_08460) - 1662779..1662982 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=357253 E5491_RS08370 WP_001788899.1 1658030..1658476(-) (comGD) [Staphylococcus aureus strain WCUH29]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=357253 E5491_RS08370 WP_001788899.1 1658030..1658476(-) (comGD) [Staphylococcus aureus strain WCUH29]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment