Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   RI02_RS19130 Genome accession   NZ_CP039020
Coordinates   3724270..3725382 (+) Length   370 a.a.
NCBI ID   WP_017368464.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BA06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3719270..3730382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI02_RS19105 (RI02_19210) rnpA 3720021..3720380 (-) 360 WP_008347592.1 ribonuclease P protein component -
  RI02_RS19110 (RI02_19215) rpmH 3720459..3720593 (-) 135 WP_008360908.1 50S ribosomal protein L34 -
  RI02_RS19115 (RI02_19220) dnaA 3721214..3722554 (+) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  RI02_RS19120 (RI02_19225) dnaN 3722751..3723887 (+) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  RI02_RS19125 (RI02_19230) yaaA 3724038..3724253 (+) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  RI02_RS19130 (RI02_19235) recF 3724270..3725382 (+) 1113 WP_017368464.1 DNA replication/repair protein RecF Machinery gene
  RI02_RS19135 (RI02_19240) remB 3725400..3725645 (+) 246 WP_008347601.1 extracellular matrix regulator RemB -
  RI02_RS19140 (RI02_19245) gyrB 3725703..3727619 (+) 1917 WP_026050185.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  RI02_RS19145 (RI02_19250) gyrA 3727853..3730357 (+) 2505 WP_017368466.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42604.68 Da        Isoelectric Point: 7.1297

>NTDB_id=356753 RI02_RS19130 WP_017368464.1 3724270..3725382(+) (recF) [Bacillus altitudinis strain BA06]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQTMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=356753 RI02_RS19130 WP_017368464.1 3724270..3725382(+) (recF) [Bacillus altitudinis strain BA06]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAACGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTTGTCACCACTACGAGTGT
TGAAGGCATCGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832

Multiple sequence alignment