Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LL3_RS00220 Genome accession   NC_017190
Coordinates   42768..43595 (+) Length   275 a.a.
NCBI ID   WP_013350747.1    Uniprot ID   A0A9P1JDV1
Organism   Bacillus amyloliquefaciens LL3     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 37768..48595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL3_RS00195 (LL3_00029) - 38843..40276 (+) 1434 WP_013350743.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  LL3_RS00200 (LL3_00030) tmk 40273..40911 (+) 639 WP_013350744.1 dTMP kinase -
  LL3_RS00205 (LL3_00031) darA 40982..41311 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  LL3_RS00210 (LL3_00032) - 41324..41764 (+) 441 WP_013350745.1 YaaR family protein -
  LL3_RS00215 (LL3_00033) holB 41776..42765 (+) 990 WP_013350746.1 DNA polymerase III subunit delta' -
  LL3_RS00220 (LL3_00034) yaaT 42768..43595 (+) 828 WP_013350747.1 competence/sporulation regulator complex protein RicT Regulator
  LL3_RS00225 (LL3_00035) yabA 43610..43969 (+) 360 WP_013350748.1 replication initiation-control protein YabA -
  LL3_RS00230 (LL3_00036) - 44030..44773 (+) 744 WP_013350749.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LL3_RS00235 (LL3_00037) - 44760..45059 (+) 300 WP_013350750.1 GIY-YIG nuclease family protein -
  LL3_RS00240 (LL3_00038) rsmI 45034..45915 (+) 882 WP_013350751.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LL3_RS00245 (LL3_00039) abrB 45965..46255 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 31174.96 Da        Isoelectric Point: 4.6504

>NTDB_id=35615 LL3_RS00220 WP_013350747.1 42768..43595(+) (yaaT) [Bacillus amyloliquefaciens LL3]
MYNVIGVRFKKAGKIYYFDPNGFDIEQDSCVIVETVRGVEYGQVVIANKQVDEHDVVLPLRKVIRVADERDLLIVEENKQ
EALSAFEICQKKVADHGLDMKLVDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGP
CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQLPDLGEMITTANGPAKVVGLNI
LERVLQVELKNREKVIEYTWEELLEEGVVSAQTTD

Nucleotide


Download         Length: 828 bp        

>NTDB_id=35615 LL3_RS00220 WP_013350747.1 42768..43595(+) (yaaT) [Bacillus amyloliquefaciens LL3]
TTGTACAACGTAATAGGCGTCCGCTTTAAAAAAGCGGGAAAAATTTATTATTTTGATCCGAACGGATTTGATATAGAACA
GGACAGCTGCGTCATTGTTGAAACCGTAAGAGGTGTCGAATACGGACAGGTTGTCATCGCAAATAAACAAGTGGACGAGC
ATGATGTTGTGCTTCCGCTTCGAAAAGTCATTCGCGTTGCTGATGAACGCGATCTTCTCATTGTAGAAGAAAACAAACAA
GAGGCCCTGTCCGCTTTTGAAATCTGTCAGAAAAAAGTGGCTGATCACGGCTTAGATATGAAACTGGTTGATGTTGAGTT
TACGTTTGACCGCAATAAAGTCATTTTTTACTTCACAGCCGACGGACGGGTTGATTTCAGGGAATTGGTCAAAGACTTGG
CTTCTATCTTTAAAACAAGAATCGAATTGCGTCAAATCGGTGTGAGAGACGAAGCGAAAATGCTCGGCGGTATCGGCCCG
TGCGGGAGAATGCTTTGCTGCTCCACGTTCCTCGGTGATTTTGAACCGGTGTCCATCAAAATGGCGAAGGACCAAAATTT
ATCGTTGAACCCAACGAAAATTTCGGGTCTGTGCGGCCGTTTGATGTGCTGTTTGAAGTACGAAAATGATGAGTATGAGA
CGGCGAAAGAACAGCTACCGGATTTAGGCGAAATGATTACAACGGCAAACGGCCCCGCAAAGGTTGTCGGTCTTAATATT
CTGGAACGGGTGCTTCAGGTGGAACTGAAGAATCGTGAAAAAGTGATAGAATATACTTGGGAAGAGCTCTTGGAAGAGGG
CGTCGTATCCGCACAAACCACAGATTAA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(62-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JDV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

97.091

100

0.971

Multiple sequence alignment