Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   GPY31_RS19135 Genome accession   NZ_CP046760
Coordinates   2191279..2194650 (-) Length   1123 a.a.
NCBI ID   WP_025546357.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM51552     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2186279..2199650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY31_RS19105 - 2187133..2187561 (+) 429 WP_005455485.1 HIT domain-containing protein -
  GPY31_RS19110 - 2187679..2187909 (-) 231 WP_005455490.1 FeoC-like transcriptional regulator -
  GPY31_RS19115 feoB 2187906..2190182 (-) 2277 WP_005486014.1 Fe(2+) transporter permease subunit FeoB -
  GPY31_RS19120 - 2190182..2190409 (-) 228 WP_005455496.1 FeoA family protein -
  GPY31_RS19135 tfoS 2191279..2194650 (-) 3372 WP_025546357.1 AraC family transcriptional regulator Regulator
  GPY31_RS19140 znuA 2194861..2195739 (-) 879 WP_102600649.1 zinc ABC transporter substrate-binding protein ZnuA -
  GPY31_RS19145 znuC 2195818..2196606 (+) 789 WP_017448743.1 zinc ABC transporter ATP-binding protein ZnuC -
  GPY31_RS19150 znuB 2196599..2197384 (+) 786 WP_005455500.1 zinc ABC transporter permease subunit ZnuB -
  GPY31_RS19155 sucD 2197522..2198394 (-) 873 WP_005486020.1 succinate--CoA ligase subunit alpha -
  GPY31_RS19160 sucC 2198394..2199560 (-) 1167 WP_005496074.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1123 a.a.        Molecular weight: 126809.32 Da        Isoelectric Point: 5.5776

>NTDB_id=355042 GPY31_RS19135 WP_025546357.1 2191279..2194650(-) (tfoS) [Vibrio parahaemolyticus strain AM51552]
MLRQLVLIFWGLFISSQAFALNNANAIFYPLPTQVKGTFIAAKKLFLGEQGGLWIHDVHGRVLFYDGQNVLPKSGSFLQT
TAKQLAYHQGSFWTFVENEVYQTYPNKERQLVFSLNPGSQIRKIGSSGDYIWVSDGAHFYTYNIKTNELDSFSLLQLYQH
SNNSYVYINDAILIETKWALATTSGVYLSEGNKFDHVISSGQNYIEKVYYSHTRREILVGTLKGALIFNIYEPNKEIVKI
GGSHVLTFSETNQEYWVGTEHGLYLYSFLTGEVTEVEPASFLELELDSTKIYSLLSDNMGGMWIATNQGIRYYSLFSKKF
ERVTFSSYDSQTLSGRIRQTVTGPDGVLWFADDRKLYRSGAEGIVKVLELDSQINEFAFQRGMLWLATSKGLEIFQLEGL
KKVSFPYLQVMAGHAVEHIALDDANRLWVSSGYQLYNVDIDKQSVRNFGSEWIVSQYLPAKVTRLYDTEDKLFIGTDHGI
YEYDDERIRFNRFSEKYGESLDIVTAADGSQWFASSYGLFKTVAGGEAKQVLEMSVANARPACLISDAKGVWLASSVGLS
YYRLSGELVKHYSSASGLINNEFIPGICSVVKRTEDGERELVLGSKYGLVKAEASKLLVSNPPESRFIVSQVMLENDVIQ
VGSSDLDGIKLPYGSSLSFLFGIMPKPDSQNLYYRLNEDDRWQTLEGGQLTLEHLNSGEYHLQVSNESQVTAGVVGLESR
FEVLKPWYLSQLAILGFFVSISTLIGLIMYWRSRYVMQANRELAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKTSVDYISSKLPVERDSITEDHVSKTYWQLNELKSAPGDASNGSQNYNLSQITQSVVDVWRDDFAKAGISVELE
DENKSSRIALESFNLDVIFNSIFANIIKRSFRGQAVKVMLEEGRDIVSLSFLDYGTQLPNKLSLSRPANNNVDLSIDNLS
QLVTVSGGHLAVFTSDAQNKIEITWPMAKELSHVEEVLPEFVPENIVEEKASPENEWLQKVYQLVAEHYHDPDFGTATAA
KMLFMSERSLQRRFKSASSRTLKDYLTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMEQDS
HAN

Nucleotide


Download         Length: 3372 bp        

>NTDB_id=355042 GPY31_RS19135 WP_025546357.1 2191279..2194650(-) (tfoS) [Vibrio parahaemolyticus strain AM51552]
TTGCTTCGCCAACTTGTCCTGATCTTCTGGGGACTCTTCATATCATCTCAAGCATTTGCGCTGAACAACGCAAATGCCAT
CTTTTACCCTTTGCCTACTCAGGTTAAGGGCACTTTTATTGCTGCGAAAAAATTGTTCTTGGGCGAGCAAGGTGGGCTAT
GGATTCATGACGTACATGGCCGCGTTCTTTTTTATGACGGCCAGAATGTTCTGCCAAAATCAGGCAGTTTTTTGCAAACG
ACCGCAAAGCAGCTTGCGTATCATCAAGGGTCATTCTGGACCTTTGTCGAAAATGAGGTTTATCAGACCTACCCAAACAA
AGAAAGGCAGTTGGTCTTTAGCCTTAACCCCGGGTCGCAAATTAGAAAAATAGGTTCATCAGGTGATTATATTTGGGTCA
GTGATGGCGCACATTTTTATACCTACAACATCAAAACCAATGAACTTGATTCATTTTCACTGCTTCAACTTTATCAACAT
AGCAATAATAGTTATGTGTACATCAATGATGCGATTCTGATCGAAACCAAATGGGCGTTGGCTACAACATCTGGTGTCTA
TCTCTCTGAAGGTAATAAATTTGATCATGTGATTTCATCCGGTCAAAACTACATTGAAAAAGTGTACTACTCGCATACGA
GACGCGAGATACTGGTCGGCACCTTAAAAGGCGCGTTGATCTTCAATATTTACGAGCCGAACAAAGAGATCGTCAAAATT
GGCGGCTCCCACGTACTGACGTTTTCAGAGACCAATCAAGAGTATTGGGTTGGTACTGAGCACGGTTTGTATCTCTACTC
GTTTTTAACAGGTGAAGTTACTGAAGTTGAGCCTGCGAGCTTCTTAGAGTTAGAGCTCGATAGCACTAAAATTTATTCCT
TACTTAGCGACAACATGGGCGGAATGTGGATAGCGACCAACCAAGGCATTCGTTATTACTCTTTGTTCAGCAAAAAATTT
GAGCGAGTCACCTTTAGTAGTTATGACTCGCAAACCTTATCTGGTCGTATCAGACAAACGGTAACAGGGCCAGATGGTGT
GCTTTGGTTTGCCGATGACCGCAAGCTGTATCGTTCTGGCGCGGAAGGGATTGTAAAAGTCTTAGAATTAGATTCTCAGA
TTAACGAATTTGCGTTCCAACGAGGCATGTTATGGCTTGCCACTTCAAAAGGCTTGGAGATATTCCAATTGGAAGGGCTG
AAAAAGGTTAGCTTCCCTTATTTACAAGTGATGGCTGGGCATGCTGTTGAGCATATTGCTCTAGACGACGCAAACCGTTT
GTGGGTATCCAGCGGTTACCAACTTTACAACGTTGATATCGACAAGCAATCCGTCAGAAACTTTGGTAGCGAATGGATCG
TGAGTCAGTACTTACCAGCTAAAGTGACGCGCCTATATGATACCGAAGATAAGCTTTTTATTGGTACGGACCACGGCATT
TACGAATACGATGATGAACGTATTCGTTTCAATCGTTTCTCGGAAAAATATGGCGAGTCGCTAGATATAGTGACAGCGGC
GGATGGCTCTCAGTGGTTTGCCTCTTCCTATGGGTTGTTTAAAACAGTGGCTGGTGGCGAAGCCAAGCAAGTCTTGGAGA
TGAGTGTTGCCAATGCTCGTCCGGCGTGTTTGATCAGTGATGCGAAAGGTGTGTGGCTCGCATCTTCTGTTGGGTTGAGT
TACTACCGATTGTCCGGTGAGTTAGTTAAACATTATTCATCTGCATCGGGCTTGATTAATAATGAGTTTATTCCTGGGAT
ATGTAGCGTAGTGAAACGCACAGAAGATGGTGAACGTGAACTTGTTTTAGGCTCAAAATATGGATTAGTTAAAGCAGAGG
CTTCAAAACTATTGGTGTCAAACCCGCCAGAATCCCGCTTTATTGTTAGCCAAGTGATGCTTGAAAACGATGTAATCCAA
GTGGGGAGTTCCGACCTTGATGGGATTAAGCTGCCTTATGGTTCTTCGCTGAGTTTTCTCTTTGGCATCATGCCTAAACC
GGATAGCCAGAACCTGTACTACCGCTTAAACGAAGACGATCGATGGCAGACCTTAGAAGGGGGGCAGTTAACCTTAGAGC
ACCTCAACTCTGGGGAATACCACCTTCAAGTGAGTAACGAGTCACAGGTAACGGCGGGCGTTGTTGGCTTAGAGTCTCGT
TTTGAAGTGCTCAAACCATGGTATCTATCCCAGCTTGCGATATTAGGCTTTTTCGTCTCAATTTCTACGCTTATCGGTCT
TATCATGTACTGGCGATCACGATATGTTATGCAAGCAAACCGAGAGCTTGCTGCTCAGGTCACTCTAAAGACCAACCAGC
TAAGGCATCAAAGCCGCGTGTTATTGACGAGTAACCAACAGTTAAGAAAGCAAATTCAGGTTAGAAATCTATTAGTTGAC
CATGTTGCTCAGTCTATAAAAACCAGCGTCGATTATATCTCGTCAAAATTGCCAGTGGAGAGAGATTCCATCACAGAGGA
TCACGTATCAAAAACTTACTGGCAGCTGAATGAGCTTAAAAGTGCTCCAGGTGATGCGAGTAACGGCAGTCAAAACTACA
ACCTAAGCCAAATTACGCAATCTGTGGTGGATGTGTGGCGAGACGATTTCGCCAAAGCGGGGATCTCTGTGGAGTTAGAG
GATGAGAACAAGTCTAGCCGTATTGCTCTAGAGAGTTTCAATCTGGATGTTATCTTTAACAGTATCTTTGCCAACATCAT
CAAGCGCTCTTTCCGAGGTCAAGCCGTTAAAGTGATGCTAGAAGAGGGACGGGACATTGTCTCACTCAGCTTTTTGGATT
ACGGAACGCAATTGCCAAATAAACTTTCTCTAAGTCGTCCTGCTAATAACAATGTGGACTTGAGTATCGACAATCTTTCG
CAGTTGGTTACGGTGAGTGGAGGGCACTTAGCGGTGTTCACTTCTGATGCGCAGAATAAAATTGAGATTACTTGGCCGAT
GGCCAAAGAGTTGAGCCATGTTGAGGAAGTTTTACCAGAATTTGTGCCAGAAAACATCGTCGAAGAGAAAGCCAGTCCAG
AGAATGAGTGGCTACAAAAGGTTTATCAGTTAGTTGCTGAGCATTACCATGACCCTGATTTTGGTACTGCGACAGCGGCT
AAGATGTTATTTATGTCTGAACGTAGTTTACAACGCCGCTTTAAGTCGGCCTCGTCAAGAACGTTAAAAGATTATTTAAC
GGAGGTACGGTTAGAAACTGCTTGTGAACAGTTACTCGCAGGTGAAAAAATCAGTGAAGTGGCTTTCAACTGCGGTTTCA
ATGATCCTTCTTACTTCAGCCAGAAGTTCAAGTTGCACTTTGGTTTACCTCCATCAAAGTTCGCGATGGAACAAGACAGT
CACGCAAATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1040-1114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

38.535

100

0.394