Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GO005_RS06960 Genome accession   NZ_CP046592
Coordinates   1334778..1335914 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain TR21     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329778..1340914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS06940 (GO005_06935) uxaA 1330229..1331722 (+) 1494 WP_019712454.1 altronate dehydratase family protein -
  GO005_RS06945 (GO005_06940) yjnA 1331761..1332525 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  GO005_RS06950 (GO005_06945) bstD 1332749..1333213 (-) 465 WP_014479541.1 DinB family protein -
  GO005_RS06955 (GO005_06950) yjoB 1333362..1334633 (+) 1272 WP_003245490.1 ATPase YjoB -
  GO005_RS06960 (GO005_06955) rapC 1334778..1335914 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  GO005_RS06965 (GO005_06960) phrA 1335904..1336038 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  GO005_RS06970 (GO005_06965) yjpA 1336069..1336326 (-) 258 WP_003232731.1 YciI family protein -
  GO005_RS06975 (GO005_06970) xlyB 1336446..1337399 (+) 954 WP_032721375.1 N-acetylmuramoyl-L-alanine amidase -
  GO005_RS06980 (GO005_06975) yjqA 1337439..1337816 (-) 378 WP_014476529.1 PH domain-containing protein -
  GO005_RS06985 (GO005_06980) pghB 1337921..1338523 (+) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  GO005_RS06990 (GO005_06985) xpdC 1338600..1339436 (+) 837 WP_003245071.1 manganese catalase family protein -
  GO005_RS06995 (GO005_06990) xkdA 1339472..1340068 (-) 597 WP_019712456.1 ImmA/IrrE family metallo-endopeptidase -
  GO005_RS07000 (GO005_06995) xre 1340231..1340572 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=353725 GO005_RS06960 WP_015252291.1 1334778..1335914(+) (rapC) [Bacillus subtilis strain TR21]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=353725 GO005_RS06960 WP_015252291.1 1334778..1335914(+) (rapC) [Bacillus subtilis strain TR21]
TTGAGGATGAAGCAGACGATTCCGTCCTCATATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTGGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCTCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418