Detailed information NTG0353682

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: GO005_RS01300
• Genome accession: NZ_CP046592
• Coordinates: 217770..218903 (+)
• Length: 377 a.a.
• NCBI ID: WP_128473525.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain TR21
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 212770..223903

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO005_RS01275 (GO005_01260)	-	213665..213943 (+)	279	WP_017696800.1	hemolysin XhlA family protein	-
GO005_RS01280 (GO005_01265)	-	213959..214222 (+)	264	WP_095843439.1	phage holin	-
GO005_RS01285 (GO005_01270)	-	214274..215248 (+)	975	WP_095843440.1	N-acetylmuramoyl-L-alanine amidase	-
GO005_RS01290 (GO005_01275)	-	215286..215726 (-)	441	WP_042977637.1	SMI1/KNR4 family protein	-
GO005_RS01295 (GO005_01280)	-	215739..217559 (-)	1821	WP_128473524.1	T7SS effector LXG polymorphic toxin	-
GO005_RS01300 (GO005_01285)	rapC	217770..218903 (+)	1134	WP_128473525.1	tetratricopeptide repeat protein	Regulator
GO005_RS01305	-	218893..219051 (+)	159	WP_164907155.1	hypothetical protein	-
GO005_RS01310 (GO005_01290)	-	219083..219415 (-)	333	WP_087961654.1	YolD-like family protein	-
GO005_RS01315 (GO005_01295)	-	219521..219748 (+)	228	WP_087961653.1	hypothetical protein	-
GO005_RS01320 (GO005_01300)	-	219741..219953 (+)	213	WP_087961652.1	transcriptional regulator	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 44601.95 Da
• Isoelectric Point: 5.4591

>NTDB_id=353682 GO005_RS01300 WP_128473525.1 217770..218903(+) (rapC) [Bacillus subtilis strain TR21]
MNPVLPSSHVGVKITEWYKMIRQFSVPDAEILKAEVEREIKQMEEDEYLLIYYSLMSFRHQLMLDYLEPEKKYRTARPTI
SELLEKIEAPQKKLTGLLKYYSLFFRGMYEFDQQEFVEAINYYRKAEKELYAVTDEIEQAEFHFKVAEAYYNMKQTHVSM
HHILKALEIYDQNPLYTVRKIQSLFVIVGNYLDFKHYEKGLKHLEEALKLSKELGHDRLISSALYNLGECYHYMGQLSKA
EGYLKEAAEVAERANLRTLPHTLHSLATVLFKQEKFNEGQKVLQQGIETAQKFNDELFLSMNQFLNALYIESVDKQGILN
ILNHLNESHMFSFTEHITLLTAEYYREGGEFEESSFFYDKMVEAQLQIQRGDCLYEY

Nucleotide

• Length: 1134 bp

>NTDB_id=353682 GO005_RS01300 WP_128473525.1 217770..218903(+) (rapC) [Bacillus subtilis strain TR21]
GTGAATCCGGTTTTACCTTCCTCACATGTAGGGGTTAAGATTACCGAATGGTATAAGATGATACGTCAGTTTAGTGTTCC
GGATGCTGAAATTTTAAAAGCAGAAGTTGAAAGAGAAATTAAACAAATGGAAGAGGATGAGTATTTACTAATTTATTACT
CACTAATGAGCTTTCGACACCAACTTATGCTCGACTACTTAGAGCCGGAAAAAAAGTATAGAACAGCACGTCCAACCATC
TCAGAATTACTTGAAAAAATTGAAGCTCCCCAAAAGAAATTAACCGGTCTCCTGAAATATTACTCACTATTTTTCCGCGG
TATGTATGAATTTGATCAGCAAGAATTCGTGGAAGCTATTAACTATTACCGTAAAGCTGAAAAAGAACTTTATGCTGTTA
CTGATGAAATCGAACAAGCTGAATTTCATTTTAAGGTGGCAGAAGCTTATTACAACATGAAACAAACTCACGTTTCCATG
CATCACATTTTAAAGGCATTAGAGATTTATGATCAGAATCCGCTGTATACTGTAAGGAAAATTCAAAGCTTGTTTGTAAT
CGTAGGTAACTATCTCGATTTTAAACATTATGAAAAAGGGTTAAAACATCTTGAAGAAGCCCTGAAGCTTTCTAAGGAAT
TAGGGCACGACAGACTAATAAGTTCTGCTTTGTATAATTTAGGTGAATGTTATCATTACATGGGACAACTAAGTAAAGCT
GAAGGATATTTGAAAGAAGCAGCTGAGGTTGCAGAAAGAGCAAATTTAAGGACACTTCCTCATACGCTCCATTCGTTGGC
CACAGTTTTATTCAAGCAGGAAAAGTTTAATGAAGGACAGAAGGTTTTACAGCAAGGGATCGAAACAGCACAAAAATTCA
ATGATGAACTTTTCCTATCGATGAATCAGTTTCTGAATGCCCTATATATTGAGTCTGTTGATAAACAGGGTATCCTCAAT
ATATTGAATCATCTTAATGAAAGTCACATGTTTTCATTTACGGAACACATAACGCTGCTAACTGCAGAATATTATAGAGA
AGGCGGAGAATTTGAAGAATCCAGTTTTTTCTATGATAAAATGGTTGAAGCGCAGCTTCAAATTCAGCGAGGTGACTGTT
TATATGAGTATTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (197-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	43.733	99.469	0.435
rapF	Bacillus subtilis subsp. subtilis str. 168	40.212	100	0.403