Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GO004_RS10350 Genome accession   NZ_CP046591
Coordinates   1953038..1954168 (-) Length   376 a.a.
NCBI ID   WP_195727912.1    Uniprot ID   -
Organism   Bacillus subtilis strain R31     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1948038..1959168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS10305 (GO004_10285) cotJC 1948133..1948702 (-) 570 WP_003233850.1 spore coat protein CotJC -
  GO004_RS10310 (GO004_10290) cotJB 1948717..1948980 (-) 264 WP_003219491.1 spore coat protein CotJB -
  GO004_RS10315 (GO004_10295) cotJA 1948964..1949212 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  GO004_RS10320 (GO004_10300) yesF 1949339..1950207 (-) 869 Protein_2055 NAD-dependent epimerase/dehydratase family protein -
  GO004_RS10325 (GO004_10305) yesE 1950204..1950647 (-) 444 WP_064911576.1 nuclear transport factor 2 family protein -
  GO004_RS10330 (GO004_10310) yezE 1950726..1951310 (-) 585 WP_015715467.1 TetR/AcrR family transcriptional regulator -
  GO004_RS10335 (GO004_10315) yeeK 1951425..1951862 (-) 438 WP_003244206.1 spore coat protein YeeK -
  GO004_RS10340 (GO004_10320) yeeI 1951996..1952715 (-) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GO004_RS10345 (GO004_10325) phrH 1952875..1953048 (-) 174 WP_044052608.1 phosphatase RapH inhibitor PhrH -
  GO004_RS10350 (GO004_10330) rapC 1953038..1954168 (-) 1131 WP_195727912.1 Rap family tetratricopeptide repeat protein Regulator
  GO004_RS10355 (GO004_10335) - 1954331..1955344 (-) 1014 WP_195727913.1 hypothetical protein -
  GO004_RS10360 (GO004_10340) - 1955449..1956369 (-) 921 WP_046380836.1 DUF5655 domain-containing protein -
  GO004_RS10365 (GO004_10345) - 1956382..1956720 (-) 339 WP_021481280.1 hypothetical protein -
  GO004_RS10370 (GO004_10350) - 1956887..1958773 (+) 1887 WP_172480932.1 T7SS effector LXG polymorphic toxin -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44005.22 Da        Isoelectric Point: 5.8846

>NTDB_id=353601 GO004_RS10350 WP_195727912.1 1953038..1954168(-) (rapC) [Bacillus subtilis strain R31]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALKLATDIQNDRFIAISLLNIANSYDRSGDDQIAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKTGQTQRAFQFIEEGLDHITARSHKFYRELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=353601 GO004_RS10350 WP_195727912.1 1953038..1954168(-) (rapC) [Bacillus subtilis strain R31]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGATCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATATTACTCTTTGTTTTTCCGAGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTTTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATAGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTCCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAGACAGGCCAAACACAGCGGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAGAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTGTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTTTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.426

100

0.404
  rapF Bacillus subtilis subsp. subtilis str. 168

39.523

100

0.396