Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   E4K03_RS03950 Genome accession   NZ_CP038262
Coordinates   809752..810753 (+) Length   333 a.a.
NCBI ID   WP_000079193.1    Uniprot ID   A0A3R9TLC9
Organism   Acinetobacter baumannii strain LEV1449/17Ec     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 804752..815753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K03_RS03920 (E4K03_03920) - 806332..806462 (-) 131 Protein_746 hypothetical protein -
  E4K03_RS03925 (E4K03_03925) rpoZ 806501..806779 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  E4K03_RS03930 (E4K03_03930) gmk 806852..807481 (-) 630 WP_000015937.1 guanylate kinase -
  E4K03_RS03935 (E4K03_03935) ispH 807604..808554 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  E4K03_RS03940 (E4K03_03940) fimU 808724..809197 (+) 474 WP_001214064.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  E4K03_RS03945 (E4K03_03945) pilV 809191..809751 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  E4K03_RS03950 (E4K03_03950) pilW 809752..810753 (+) 1002 WP_000079193.1 PilW family protein Machinery gene
  E4K03_RS03955 (E4K03_03955) pilX 810750..811568 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  E4K03_RS03960 (E4K03_03960) pilY1 811580..815434 (+) 3855 WP_000768940.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35771.45 Da        Isoelectric Point: 5.9994

>NTDB_id=352863 E4K03_RS03950 WP_000079193.1 809752..810753(+) (pilW) [Acinetobacter baumannii strain LEV1449/17Ec]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSHGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQTVHAADNRTRFLRRVYS
VTIALRNAMGETL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=352863 E4K03_RS03950 WP_000079193.1 809752..810753(+) (pilW) [Acinetobacter baumannii strain LEV1449/17Ec]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCATGGTGCAGGTGATACTGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAGCTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGTTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGACTGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9TLC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.099

100

0.991

Multiple sequence alignment