Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GE024_RS09765 Genome accession   NZ_CP046521
Coordinates   1974514..1976223 (-) Length   569 a.a.
NCBI ID   WP_156667777.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1969514..1981223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS09745 (GE024_09785) radA 1969835..1971196 (-) 1362 WP_093999360.1 DNA repair protein RadA Machinery gene
  GE024_RS09750 (GE024_09790) - 1971294..1971740 (-) 447 WP_093999365.1 dUTP diphosphatase -
  GE024_RS09755 (GE024_09795) - 1971846..1972613 (-) 768 WP_003045505.1 epoxyqueuosine reductase QueH -
  GE024_RS09760 (GE024_09800) - 1972730..1974514 (-) 1785 WP_093999359.1 ABC transporter ATP-binding protein -
  GE024_RS09765 (GE024_09805) rcrP 1974514..1976223 (-) 1710 WP_156667777.1 ABC transporter ATP-binding protein Regulator
  GE024_RS09770 (GE024_09810) rcrR 1976216..1976665 (-) 450 WP_003045511.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  GE024_RS09775 (GE024_09815) - 1976965..1977981 (+) 1017 WP_093999357.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GE024_RS09780 (GE024_09820) galU 1978013..1978918 (+) 906 WP_093999356.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GE024_RS09785 (GE024_09825) - 1979180..1979851 (-) 672 WP_093999355.1 rhomboid family intramembrane serine protease -
  GE024_RS09790 (GE024_09830) - 1979848..1980375 (-) 528 WP_039994714.1 5-formyltetrahydrofolate cyclo-ligase -
  GE024_RS11450 (GE024_09835) - 1980881..1981030 (-) 150 WP_093999354.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63231.93 Da        Isoelectric Point: 6.3333

>NTDB_id=352632 GE024_RS09765 WP_156667777.1 1974514..1976223(-) (rcrP) [Streptococcus canis strain HL_100]
MLKEAILRYKWYVLGSLLMIIGVVASSLLQPHYLKDVLSAVIQNNQDKIYDVGRLLLIIALVGLVSGTLNTVLSAKIAQG
VSADIREKTFRKIQSFSYANVEAFNAGNLVVRMTNDITQIQNLVMMLFQVLLRLPILFMGSFIMAVQTLPDLWWVIVLMV
ILIGIIMALVMSQMGPRFGKFQKLMDKINRIAKENLRGVRVVKSFVQEREQYAKFKEASKELLDLNLFIGYGFSLMQPTL
MLVSYLAVYVSIYMVSGMVETDPAVIGNIASFMTYMMQIMFSIIMVGFMGMQASRAFVSIGRIKEVLNTEPAMTFETDQE
EEVSGSIVFEDVSFTYPNDDEPTLRHISFSIEPGQMIGVVGATGAGKSTLAQLIPRLFDPQEGQILLGGKPITSLSQATL
RQTVSIVLQKAILFSGTIADNLRQRSATADDYAMERAARIAQAMEFIDRMDGRYESQVEERGNNFSGGQKQRMSIARGVI
NQPKILVLDDSTSALDAKSEKLVQEALNKELKGTTTVIIAQKISSVVKADKILVLDQGQLLGEGTHAELLANNAVYREIY
DTQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=352632 GE024_RS09765 WP_156667777.1 1974514..1976223(-) (rcrP) [Streptococcus canis strain HL_100]
ATGCTTAAAGAGGCAATCCTGCGTTACAAATGGTACGTTTTAGGCTCGCTACTGATGATTATTGGGGTGGTTGCGAGTAG
TCTGTTACAACCTCATTATTTAAAAGATGTGTTAAGTGCCGTTATTCAAAATAACCAAGATAAGATTTATGATGTGGGGA
GGTTGTTGCTTATCATTGCCCTTGTGGGCTTGGTTTCTGGAACCCTTAATACGGTTTTATCGGCTAAGATTGCTCAAGGG
GTTTCAGCTGATATTCGTGAGAAGACTTTCCGAAAAATTCAGAGTTTTTCTTATGCCAATGTCGAGGCATTTAATGCTGG
GAACCTTGTCGTTCGGATGACCAATGATATTACTCAAATTCAAAATTTGGTGATGATGCTGTTTCAGGTTCTCCTTCGAT
TGCCAATTCTCTTTATGGGCTCTTTTATTATGGCAGTGCAGACCTTACCTGACTTGTGGTGGGTCATTGTGCTGATGGTC
ATTTTAATTGGGATAATCATGGCTTTGGTCATGAGTCAGATGGGACCACGTTTTGGGAAATTCCAAAAATTGATGGACAA
GATTAATCGTATTGCCAAGGAAAACCTTCGCGGGGTGCGTGTGGTTAAATCCTTTGTGCAAGAACGGGAACAATATGCCA
AATTTAAAGAAGCTTCTAAAGAACTATTGGACTTGAATCTTTTTATCGGCTATGGCTTTTCGTTGATGCAACCAACTTTG
ATGTTAGTATCTTATTTGGCAGTTTATGTATCCATCTACATGGTTTCTGGCATGGTTGAAACAGACCCAGCAGTTATTGG
AAATATTGCTTCCTTTATGACTTATATGATGCAAATCATGTTTTCAATTATCATGGTTGGCTTTATGGGCATGCAAGCCA
GTCGTGCCTTTGTTTCTATTGGTCGTATCAAAGAAGTGCTCAATACTGAGCCAGCCATGACCTTTGAAACTGATCAAGAA
GAAGAGGTTTCAGGTAGTATTGTGTTTGAGGATGTGAGCTTTACCTATCCTAATGATGATGAACCGACCTTGCGCCATAT
TTCCTTTAGCATTGAACCTGGTCAAATGATTGGCGTTGTGGGAGCTACTGGGGCTGGAAAGTCAACACTGGCACAGCTTA
TTCCTCGCTTGTTTGACCCACAAGAAGGTCAAATTTTGCTGGGAGGCAAACCGATTACCTCCCTCAGTCAAGCGACTCTT
CGTCAGACGGTTTCGATTGTGTTGCAAAAGGCTATTCTCTTTTCAGGAACTATTGCGGACAACCTTCGCCAGAGGTCAGC
GACTGCAGATGATTATGCCATGGAACGGGCAGCACGTATTGCGCAGGCTATGGAATTTATTGACCGCATGGATGGTCGCT
ATGAGAGCCAAGTTGAAGAACGAGGCAACAACTTTTCTGGTGGGCAAAAACAACGGATGTCGATTGCGCGTGGCGTCATT
AACCAGCCTAAGATTCTTGTTTTAGACGATTCAACGTCTGCCTTGGATGCCAAGTCAGAAAAATTGGTACAAGAAGCCTT
AAACAAGGAATTGAAAGGCACAACGACCGTTATTATTGCCCAAAAGATTTCTTCAGTGGTGAAGGCTGATAAGATTTTAG
TTCTTGATCAGGGTCAGCTGCTTGGCGAAGGAACTCATGCTGAATTGTTAGCCAATAATGCGGTTTATCGTGAAATTTAT
GACACACAAAAAGGTAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(344-493)

ABC transporter transmembrane region (ABC_membrane)

(16-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

35.076

100

0.366