Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   GFX43_RS12470 Genome accession   NZ_CP046448
Coordinates   2452380..2452811 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain ZD01     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2447380..2457811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS12460 (GFX43_012460) hexA 2448864..2451440 (-) 2577 WP_015483239.1 DNA mismatch repair protein MutS Machinery gene
  GFX43_RS12465 (GFX43_012465) cotE 2451573..2452118 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  GFX43_RS12470 (GFX43_012470) ymcA 2452380..2452811 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  GFX43_RS12475 (GFX43_012475) miaB 2452813..2454342 (-) 1530 WP_015483238.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GFX43_RS12480 (GFX43_012480) kbl 2454490..2455668 (-) 1179 WP_015383694.1 glycine C-acetyltransferase -
  GFX43_RS12485 (GFX43_012485) tdh 2455681..2456724 (-) 1044 WP_015483237.1 L-threonine 3-dehydrogenase -
  GFX43_RS12490 (GFX43_012490) spoVS 2456989..2457249 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=352391 GFX43_RS12470 WP_003231834.1 2452380..2452811(-) (ymcA) [Bacillus subtilis strain ZD01]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=352391 GFX43_RS12470 WP_003231834.1 2452380..2452811(-) (ymcA) [Bacillus subtilis strain ZD01]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1