Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GFX43_RS03230 Genome accession   NZ_CP046448
Coordinates   610994..612127 (+) Length   377 a.a.
NCBI ID   WP_015384884.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 605994..617127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS03200 (GFX43_003200) ywmC 606789..607472 (+) 684 WP_003227700.1 VWA domain-containing protein -
  GFX43_RS03205 (GFX43_003205) - 607603..607743 (+) 141 WP_015384887.1 hypothetical protein -
  GFX43_RS03210 (GFX43_003210) ywmD 607796..608470 (+) 675 WP_003243553.1 VWA domain-containing protein -
  GFX43_RS03215 (GFX43_003215) - 608565..608726 (+) 162 WP_003227706.1 hypothetical protein -
  GFX43_RS03220 (GFX43_003220) fdhD 608972..609760 (+) 789 WP_015483815.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  GFX43_RS03225 (GFX43_003225) moaA 609776..610801 (+) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  GFX43_RS03230 (GFX43_003230) rapC 610994..612127 (+) 1134 WP_015384884.1 response regulator aspartate phosphatase RapB Regulator
  GFX43_RS03235 (GFX43_003235) - 612283..612762 (+) 480 WP_015483813.1 hypothetical protein -
  GFX43_RS03240 (GFX43_003240) csbD 612835..613023 (+) 189 WP_003227718.1 stress response protein CsbD -
  GFX43_RS20890 - 613246..613393 (+) 148 Protein_615 urea ABC transporter substrate-binding protein -
  GFX43_RS20895 - 613546..613614 (+) 69 WP_144486809.1 hypothetical protein -
  GFX43_RS20510 - 613716..613912 (+) 197 Protein_617 hypothetical protein -
  GFX43_RS03255 (GFX43_003255) ureA 614071..614388 (+) 318 WP_015483811.1 urease subunit gamma -
  GFX43_RS03260 (GFX43_003260) ureB 614385..614759 (+) 375 WP_015384879.1 urease subunit beta -
  GFX43_RS03265 (GFX43_003265) ureC 614756..616465 (+) 1710 WP_015384878.1 urease subunit alpha -
  GFX43_RS03270 (GFX43_003270) ywnA 616600..617001 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 44940.07 Da        Isoelectric Point: 4.7494

>NTDB_id=352327 GFX43_RS03230 WP_015384884.1 610994..612127(+) (rapC) [Bacillus subtilis strain ZD01]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKANDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AESFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALFVESVNLDMIQE
VFNYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=352327 GFX43_RS03230 WP_015384884.1 610994..612127(+) (rapC) [Bacillus subtilis strain ZD01]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTAATGATTTTTACAGAGTCAGAAGAATTCAATGTCATTTTGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGGCAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATCCTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCTTTATTTGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTAATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-306)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.105

100

0.424
  rapF Bacillus subtilis subsp. subtilis str. 168

41.6

99.469

0.414