Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   E1742_RS20895 Genome accession   NZ_CP038026
Coordinates   4710218..4711282 (-) Length   354 a.a.
NCBI ID   WP_134387058.1    Uniprot ID   -
Organism   Pseudoduganella plicata strain DSM 17505     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4705218..4716282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1742_RS20875 (E1742_20875) - 4706423..4706890 (-) 468 WP_134387054.1 hypothetical protein -
  E1742_RS20880 (E1742_20880) rpoH 4707248..4708147 (-) 900 WP_134387055.1 RNA polymerase sigma factor RpoH -
  E1742_RS20885 (E1742_20885) ftsX 4708633..4709547 (-) 915 WP_134387056.1 permease-like cell division protein FtsX -
  E1742_RS20890 (E1742_20890) - 4709544..4710203 (-) 660 WP_134387057.1 cell division ATP-binding protein FtsE -
  E1742_RS20895 (E1742_20895) pilA 4710218..4711282 (-) 1065 WP_134387058.1 signal recognition particle-docking protein FtsY Machinery gene
  E1742_RS20900 (E1742_20900) - 4711406..4712356 (-) 951 WP_134387059.1 MerR family transcriptional regulator -
  E1742_RS20905 (E1742_20905) - 4712457..4713374 (-) 918 WP_134387060.1 AEC family transporter -
  E1742_RS20910 (E1742_20910) - 4713424..4714398 (-) 975 WP_166793525.1 TauD/TfdA family dioxygenase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37563.47 Da        Isoelectric Point: 6.0621

>NTDB_id=351540 E1742_RS20895 WP_134387058.1 4710218..4711282(-) (pilA) [Pseudoduganella plicata strain DSM 17505]
MFSFFKKKPVTPDVPAPSVPAPAIPESAPAIAPEPASIPDSSLLDFDMETAARPEPKGSWMSRLKAGLSKTSANLSVLFV
GARIDDDLYDELEAALLMSDAGMDATTYLLDALKRKVKEDKLLDAAAVKGALKELMTDLLRPLEKSFELGRHQPTVMMIS
GVNGAGKTTTIGKLAKHMQAHGQSVLLAAGDTFRAAAREQLMVWGQRNNVTVVSQESGDPAAVSFDAVQSGKAKGTNVVM
IDTAGRLPTQLHLMEELKKIKRVIGKGMDGAPHETLLVIDGNTGQNALAQVKAFDDALALTGLIITKLDGTAKGGVIAAI
ARVRPVPVYFIGIGEKIEDLQPFNAAEFVEALLG

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=351540 E1742_RS20895 WP_134387058.1 4710218..4711282(-) (pilA) [Pseudoduganella plicata strain DSM 17505]
ATGTTCAGCTTCTTCAAGAAAAAACCTGTCACGCCGGACGTTCCAGCCCCATCGGTGCCGGCCCCCGCCATCCCCGAGAG
CGCACCCGCGATTGCGCCCGAACCTGCGTCCATTCCGGACAGTTCTCTGCTTGACTTCGACATGGAAACGGCAGCCCGGC
CCGAGCCGAAGGGGTCGTGGATGAGCCGCCTGAAGGCAGGCCTGTCGAAGACGTCCGCCAACCTGTCCGTCCTGTTTGTC
GGTGCGCGCATCGACGACGACCTGTACGACGAACTGGAAGCGGCGCTGCTGATGTCGGACGCCGGCATGGACGCCACGAC
CTACCTGCTCGACGCCCTGAAGCGCAAAGTCAAGGAAGACAAGCTGCTGGACGCTGCCGCCGTCAAGGGCGCGCTGAAGG
AGCTGATGACCGACCTGCTGCGCCCGCTGGAGAAGTCGTTCGAGCTGGGCCGGCACCAGCCCACCGTGATGATGATTTCC
GGCGTCAATGGCGCCGGAAAGACGACAACCATCGGCAAACTCGCCAAGCACATGCAGGCACACGGCCAGTCCGTGCTGCT
GGCCGCCGGCGACACGTTCCGTGCCGCCGCCCGCGAACAGCTGATGGTGTGGGGCCAGCGCAACAACGTGACAGTCGTGT
CGCAGGAGTCGGGCGACCCGGCCGCCGTGTCGTTCGACGCCGTCCAGTCCGGCAAGGCCAAGGGCACCAACGTCGTGATG
ATCGATACGGCCGGGCGCCTGCCGACGCAGCTGCACTTGATGGAAGAGCTGAAGAAGATCAAGCGTGTCATCGGCAAGGG
CATGGACGGCGCGCCCCATGAAACGCTACTCGTTATCGACGGCAACACGGGCCAGAATGCGCTGGCGCAGGTCAAGGCGT
TCGACGACGCGCTGGCGCTGACGGGCCTGATCATTACCAAGCTGGACGGTACGGCCAAGGGCGGCGTCATTGCCGCGATC
GCGCGCGTGCGCCCGGTGCCCGTCTATTTCATCGGGATCGGCGAAAAAATCGAGGACCTGCAGCCGTTCAATGCGGCCGA
GTTCGTCGAAGCACTGCTCGGTTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(81-134)

SRP54-type protein, GTPase domain (SRP54)

(154-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

60.065

87.006

0.523

Multiple sequence alignment