Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   GL187_RS02485 Genome accession   NZ_CP046379
Coordinates   484718..486394 (-) Length   558 a.a.
NCBI ID   WP_215729172.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 563     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 479718..491394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL187_RS02450 (GL187_02525) - 479930..480217 (-) 288 WP_000777753.1 hypothetical protein -
  GL187_RS02455 (GL187_02530) - 480227..480637 (-) 411 WP_001278301.1 HIT family protein -
  GL187_RS02460 (GL187_02535) pptA 480705..481436 (+) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  GL187_RS02465 (GL187_02540) pptB 481433..482482 (+) 1050 WP_000653771.1 ABC transporter permease Regulator
  GL187_RS02470 (GL187_02545) - 482650..482979 (-) 330 WP_000132572.1 hypothetical protein -
  GL187_RS02475 (GL187_02550) blpC 483161..483289 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  GL187_RS02480 (GL187_02555) - 483346..484707 (-) 1362 WP_001069060.1 bacteriocin secretion accessory protein -
  GL187_RS02485 (GL187_02560) comA/nlmT 484718..486394 (-) 1677 WP_215729172.1 peptide cleavage/export ABC transporter Regulator
  GL187_RS11535 comA/nlmT 486288..486875 (-) 588 WP_000205166.1 cysteine peptidase family C39 domain-containing protein Regulator
  GL187_RS02495 (GL187_02565) blpI 487157..487354 (+) 198 WP_001093259.1 bacteriocin-like peptide BlpI -
  GL187_RS02500 (GL187_02570) blpJ 487821..488090 (+) 270 WP_001093248.1 bacteriocin-like peptide BlpJ -
  GL187_RS02505 (GL187_02575) blpK 488159..488407 (+) 249 WP_000379965.1 bacteriocin-like peptide BlpK -
  GL187_RS02510 (GL187_02580) cipB 488651..488800 (+) 150 WP_001809846.1 bacteriocin-like peptide BlpO Regulator
  GL187_RS02515 (GL187_02585) - 488904..489023 (+) 120 WP_000346296.1 PncF family bacteriocin immunity protein -
  GL187_RS02520 (GL187_02595) - 489504..489862 (+) 359 Protein_502 immunity protein -
  GL187_RS02525 (GL187_02600) - 490491..490874 (+) 384 WP_000877381.1 hypothetical protein -

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 62977.29 Da        Isoelectric Point: 6.7844

>NTDB_id=351444 GL187_RS02485 WP_215729172.1 484718..486394(-) (comA/nlmT) [Streptococcus pneumoniae strain 563]
MIFKQKSLIAYIVLSSLLVTIINIGGSYYLQGILDEYIPNQMKSTLGIISVGLVITYILQQVMSFSRDYLLTVLSQRLSI
DVILSYIRHIFELPMSFFATRRTGEIISRFTDANSIIDALASTILSLFLDVSILILVGGVLLVQNPNLFLLSLISIPIYM
FIIFSFMKPFEKMNHDVMQSNSMVSSAIIEDINGIETIKSLTSEENRYQNIDSEFVDYLEKSFKLSKYSILQTSLKQGTK
LVLNILILWFGAQLVMSSKISIGQLITFNTLFSYFTTPMENIINLQTKLQSAKVANNRLNEVYLVESEFQVQENPVHSHF
LMGDIEFDDLSYKYGFGRDTLTDINLTIKQGDKVSLVGVSGSGKTTLAKMIVNFFEPYKGHISINHQDIKNIDKKVLRRH
INYLPQQAYIFNGSILENLTLGGNHMISQEDILRACELAEIRQDIERMPMGYQTQLSDGAGLSGGQKQRIALARALLTKA
PVLILDEATSGLDVLTEKKVIDNLMSLTDKTILFVAHRLSIAERTNRVIVLDQGKIIEVGSHQELMQAQGFYHHLFNK

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=351444 GL187_RS02485 WP_215729172.1 484718..486394(-) (comA/nlmT) [Streptococcus pneumoniae strain 563]
CTGATTTTCAAACAAAAATCTCTCATTGCTTACATTGTTCTCTCAAGCTTATTGGTCACTATTATCAATATAGGTGGTTC
TTACTATCTCCAAGGAATCTTGGATGAATACATTCCAAATCAGATGAAATCAACTTTAGGAATCATCTCAGTTGGTCTGG
TTATCACCTATATCCTCCAACAAGTCATGAGCTTCTCCAGAGATTATCTCCTAACCGTTCTGAGTCAGAGATTAAGTATT
GATGTGATTTTATCCTATATTCGCCATATTTTTGAACTTCCCATGTCTTTCTTTGCGACACGTCGTACAGGAGAAATCAT
TTCACGATTCACAGATGCTAACTCTATTATAGATGCCTTGGCTTCTACCATTCTTTCTCTTTTTCTGGATGTTTCTATTC
TGATTCTTGTAGGAGGCGTCTTACTGGTACAAAACCCTAATCTCTTCCTTCTTTCTCTTATTTCCATTCCTATATACATG
TTCATCATCTTTTCTTTTATGAAACCTTTCGAAAAAATGAACCATGATGTCATGCAAAGTAATTCTATGGTTAGCTCTGC
CATTATCGAAGATATCAACGGGATTGAAACTATAAAGTCGCTCACGAGTGAAGAAAATCGCTATCAAAATATAGACAGCG
AATTTGTAGATTATTTGGAAAAATCCTTTAAGCTCAGTAAATATTCTATTTTACAAACGAGTTTAAAGCAGGGAACAAAA
TTAGTTCTGAATATCCTTATCCTATGGTTTGGCGCTCAATTAGTCATGTCGAGTAAAATTTCTATCGGTCAGCTGATTAC
CTTTAACACACTTTTTTCTTACTTTACAACTCCTATGGAAAATATTATCAACCTCCAAACCAAACTCCAATCTGCGAAGG
TCGCTAATAACCGTTTGAACGAAGTCTATCTAGTCGAATCTGAATTTCAAGTTCAAGAAAACCCTGTCCATTCACATTTT
TTGATGGGCGATATTGAATTTGATGACCTTTCTTATAAGTATGGTTTTGGACGAGATACCTTAACAGATATTAATCTCAC
GATTAAACAAGGAGATAAGGTTAGCCTAGTTGGAGTTAGTGGTTCTGGTAAAACAACTTTAGCCAAAATGATTGTCAATT
TCTTTGAACCCTACAAAGGACATATTTCTATCAATCATCAGGATATTAAAAACATTGATAAAAAAGTCTTGCGCCGTCAT
ATTAATTACCTACCACAACAAGCCTATATCTTTAATGGCTCTATCTTGGAAAACTTAACTTTGGGCGGTAATCATATGAT
TAGCCAAGAAGATATTCTAAGAGCTTGTGAATTAGCTGAAATTCGTCAAGACATTGAAAGAATGCCTATGGGCTATCAAA
CTCAGCTCTCTGATGGAGCTGGTCTATCAGGAGGACAAAAGCAACGAATAGCCCTCGCTCGTGCTCTTTTAACTAAAGCT
CCTGTTTTAATACTAGACGAAGCTACTAGCGGTCTTGATGTCTTGACTGAGAAAAAGGTTATAGATAATCTTATGTCTCT
AACTGATAAAACCATTCTCTTTGTAGCCCATCGTCTCAGTATAGCCGAACGAACCAACCGTGTCATTGTTCTTGACCAGG
GGAAAATCATTGAAGTTGGTAGTCACCAAGAGTTAATGCAGGCGCAAGGTTTCTACCATCATCTATTCAATAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(341-490)

ABC transporter transmembrane region (ABC_membrane)

(10-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

72.89

99.821

0.728
  comA Streptococcus mitis NCTC 12261

67.563

100

0.676
  comA Streptococcus pneumoniae D39

67.204

100

0.672
  comA Streptococcus pneumoniae R6

67.204

100

0.672
  comA Streptococcus pneumoniae Rx1

67.204

100

0.672
  comA Streptococcus mitis SK321

67.025

100

0.67
  comA Streptococcus gordonii str. Challis substr. CH1

66.905

100

0.67
  comA Streptococcus pneumoniae TIGR4

66.846

100

0.668