Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   EZJ17_RS05975 Genome accession   NZ_CP038018
Coordinates   1149719..1151842 (-) Length   707 a.a.
NCBI ID   WP_205748057.1    Uniprot ID   -
Organism   Eikenella exigua strain PXX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1144719..1156842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZJ17_RS05955 (EZJ17_05940) amgK 1145881..1146885 (+) 1005 WP_067438457.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  EZJ17_RS05960 (EZJ17_05945) - 1147070..1147879 (+) 810 WP_067438454.1 CPBP family intramembrane glutamic endopeptidase -
  EZJ17_RS05965 (EZJ17_05950) aroB 1148064..1149140 (-) 1077 WP_067439653.1 3-dehydroquinate synthase -
  EZJ17_RS05970 (EZJ17_05955) - 1149140..1149688 (-) 549 WP_067438451.1 shikimate kinase -
  EZJ17_RS05975 (EZJ17_05960) pilQ 1149719..1151842 (-) 2124 WP_205748057.1 type IV pilus secretin family protein Machinery gene
  EZJ17_RS05980 (EZJ17_05965) - 1151864..1152403 (-) 540 WP_067438448.1 pilus assembly protein PilP -
  EZJ17_RS05985 (EZJ17_05970) pilO 1152434..1153048 (-) 615 WP_067438445.1 type 4a pilus biogenesis protein PilO -
  EZJ17_RS05990 (EZJ17_05975) - 1153064..1153753 (-) 690 WP_067438442.1 PilN domain-containing protein -
  EZJ17_RS05995 (EZJ17_05980) pilM 1153755..1154855 (-) 1101 WP_067438439.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 76548.76 Da        Isoelectric Point: 9.7610

>NTDB_id=351358 EZJ17_RS05975 WP_205748057.1 1149719..1151842(-) (pilQ) [Eikenella exigua strain PXX]
MKIKKLQYLTALGMGLAMQGVLAGNITDINVSALPNNQKVIKIHFDRDVLKPSGFITTTPARIALDFQNTGANLSQPVLQ
YNDSLLSQIAVAQDGNKTRVLLNLNRPGQYNAEIKGNEVWIYLNESGQASSAAARTTAPNNQIQQESLGVTESKPAAGQT
ALGSNTANVAVDFHKGANNSGVIEINTAGYRGTPEIKQRSNNLVILLKNNQLPIAAQRNLDVTDFSTPVRTISLRRLGND
TEITIKNQGGWEHKTSQSAGRYTITVSPKSVVAEGGINRNRNRNFTGKRVSLDFQDVDVRTILQILAKESNMNIVASDSV
SGKMTLSLKDVPWDQALDLVMQSRGLESRRNGNIIRVAPADEFREIDLKALEGAKRIEELGPLVSRTFQLKYKDVNEFRK
ILNINENGGSNNSNNSNSLLSSRGSAVIDPATNTLIIKDNQNVIKEFERLIEQLDVPARQVMIEARIVEAKDGFSRALGV
KFGYDRKFGSTRVGSGLGGGSSTTGNIFNLAPNVNLPAASATSSLTIVRALSSGALGLELTAMQEQNRGKIISSPRVLTQ
DRKEATIKAGLEIPYQEASSSGATSTSFKEAVLGLTVTPQITPDGNVIMDIKLNKDSVDQGCSVLGTPCISTKELTTRAM
VEDGGTIILGGIYEEDNSNTQYKVPLLGDIPLVGPLFRGTKRNNEKNELLIFITPRIMGSEGNVLRY

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=351358 EZJ17_RS05975 WP_205748057.1 1149719..1151842(-) (pilQ) [Eikenella exigua strain PXX]
ATGAAAATCAAAAAACTGCAATATCTAACTGCTTTAGGTATGGGCTTGGCCATGCAAGGCGTACTAGCTGGTAATATTAC
AGATATTAATGTCTCTGCTTTGCCAAATAATCAAAAAGTTATCAAAATCCATTTCGATCGGGATGTGTTGAAGCCTAGCG
GTTTCATTACTACTACGCCTGCTCGTATTGCTTTGGATTTCCAAAATACCGGTGCTAATCTTAGCCAACCGGTACTTCAA
TATAATGACTCCTTGCTCAGCCAAATCGCAGTTGCTCAAGACGGCAATAAGACCCGTGTTTTGCTCAACTTAAACAGACC
AGGGCAATACAATGCTGAAATCAAAGGTAACGAAGTTTGGATTTATCTGAACGAGTCTGGTCAAGCATCTTCTGCAGCTG
CCAGAACTACTGCACCCAACAACCAGATTCAGCAAGAGTCTCTGGGTGTAACTGAGAGTAAGCCTGCCGCAGGACAAACT
GCTCTTGGCAGCAATACTGCAAACGTAGCAGTTGATTTTCACAAAGGTGCAAATAATTCAGGTGTGATTGAAATTAATAC
CGCCGGCTATCGTGGCACTCCTGAAATCAAACAACGTTCAAATAACCTGGTTATTTTACTGAAAAATAACCAATTGCCGA
TTGCTGCTCAGCGCAATTTGGATGTGACCGATTTCAGCACACCGGTTCGGACTATCAGTTTGCGCCGTTTAGGTAACGAT
ACTGAGATTACCATTAAAAATCAAGGCGGCTGGGAGCATAAAACCAGCCAGTCTGCTGGTCGGTATACTATTACCGTTTC
TCCCAAATCTGTAGTGGCCGAAGGTGGTATCAACCGTAATCGCAACCGTAACTTTACCGGAAAACGTGTTTCTTTAGATT
TCCAAGACGTAGATGTGCGTACCATTCTGCAAATTTTAGCTAAAGAATCCAATATGAACATTGTGGCTAGTGACAGTGTT
TCTGGCAAGATGACCTTGTCATTAAAAGATGTGCCTTGGGATCAGGCTTTGGACTTGGTAATGCAATCACGCGGGCTAGA
GTCACGTCGTAACGGTAATATTATCCGTGTTGCTCCTGCTGATGAATTTCGAGAAATTGATCTTAAAGCTTTGGAAGGTG
CTAAACGTATCGAAGAGCTTGGTCCGCTGGTGTCTCGTACATTTCAGTTGAAGTATAAAGATGTTAATGAATTCCGCAAA
ATTTTGAATATTAATGAGAATGGTGGATCCAATAACAGTAATAACAGTAACTCTTTATTGAGCAGTCGTGGTTCTGCTGT
TATTGATCCGGCTACTAATACTTTGATTATTAAGGATAATCAAAACGTTATTAAAGAGTTTGAGCGATTAATTGAACAGT
TGGATGTTCCTGCCCGTCAAGTGATGATTGAGGCTCGTATTGTTGAAGCTAAAGATGGCTTCTCCCGTGCATTGGGTGTG
AAATTTGGTTATGATCGTAAATTCGGCTCAACCCGAGTAGGTAGTGGTTTGGGTGGGGGCTCCAGCACCACCGGTAACAT
CTTTAACCTTGCTCCGAACGTGAATCTGCCGGCAGCATCTGCGACTTCTTCGCTGACCATTGTTCGTGCCTTGTCTTCCG
GTGCACTTGGTTTGGAGTTGACTGCCATGCAGGAGCAAAACCGTGGCAAGATTATTTCTAGTCCGCGCGTGCTGACTCAA
GACCGTAAAGAAGCAACCATTAAAGCTGGTCTGGAAATTCCTTACCAAGAAGCTTCTTCCAGTGGTGCTACCAGTACCAG
CTTCAAAGAAGCTGTATTGGGCTTGACCGTTACTCCGCAAATCACGCCTGATGGCAATGTGATTATGGATATCAAGCTGA
ATAAAGACTCTGTGGATCAGGGTTGTAGCGTATTAGGCACTCCGTGTATCAGCACCAAAGAGCTGACTACCCGTGCCATG
GTAGAAGATGGTGGCACTATTATCTTGGGTGGTATCTATGAGGAAGACAACTCCAATACTCAGTATAAAGTACCGTTGTT
GGGTGATATTCCGCTCGTTGGCCCCTTGTTCCGTGGTACTAAGCGCAACAATGAGAAAAACGAATTACTGATCTTCATCA
CCCCGAGAATCATGGGCAGTGAAGGTAACGTTCTGCGCTACTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(313-359)

AMIN domain (AMIN)

(36-114)

Bacterial type II/III secretion system short domain (Secretin_N)

(386-460)

Bacterial type II and III secretion system protein (Secretin)

(542-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

49.535

100

0.528
  pilQ Neisseria gonorrhoeae strain FA1090

51.888

100

0.525
  pilQ Neisseria meningitidis MC58

54.265

77.935

0.423
  pilQ Pseudomonas aeruginosa PAK

35.685

100

0.365

Multiple sequence alignment